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Commit 8c613d61 authored by Venkat Malladi's avatar Venkat Malladi
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Analysis for the Histone centered matrix.

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Histone_TFSEE/box_plot_cluster_1.png

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Histone_TFSEE/box_plot_cluster_1.png

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Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
Histone_TFSEE/box_plot_cluster_1.png
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Histone_TFSEE/box_plot_cluster_1_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_2.png

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Histone_TFSEE/box_plot_cluster_2.png

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Histone_TFSEE/box_plot_cluster_2.png
Histone_TFSEE/box_plot_cluster_2.png
Histone_TFSEE/box_plot_cluster_2.png
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Histone_TFSEE/box_plot_cluster_2_enhancers_rpkm.png

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Histone_TFSEE/box_plot_cluster_2_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3.png

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Histone_TFSEE/box_plot_cluster_3.png

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Histone_TFSEE/box_plot_cluster_3.png
Histone_TFSEE/box_plot_cluster_3.png
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Histone_TFSEE/box_plot_cluster_3_enhancers_rpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png

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Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
Histone_TFSEE/box_plot_cluster_3_tfs_fpkm.png
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This diff is collapsed.
symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10 symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
E2F6,12.765,12.05,13.85,15.7,13.92 E2F6,12.765,12.05,13.85,15.7,13.92
GATA4,0.08,55.85,60.32,168.535,57.74
GLI2,17.815,4.495,1.7,0.37,1.075 GLI2,17.815,4.495,1.7,0.37,1.075
IRF1,2.89,2.39,0.305,3.11,2.56
KLF1,0.32,0.805,1.18,0.59,0.45 KLF1,0.32,0.805,1.18,0.59,0.45
KLF12,3.72,4.185,8.88,8.085,9.125 KLF12,3.72,4.185,8.88,8.085,9.125
KLF16,17.695,18.915,10.375,6.245,6.515 KLF16,17.695,18.915,10.375,6.245,6.515
...@@ -11,7 +9,6 @@ MTF1,2.85,3.065,4.065,5.195,4.16 ...@@ -11,7 +9,6 @@ MTF1,2.85,3.065,4.065,5.195,4.16
NR2C2,11.36,11.285,12.59,10.985,11.54 NR2C2,11.36,11.285,12.59,10.985,11.54
NRF1,12.775,12.645,15.66,15.51,16.51 NRF1,12.775,12.645,15.66,15.51,16.51
PLAG1,3.42,3.9,4.71,6.5,4.775 PLAG1,3.42,3.9,4.71,6.5,4.775
RARA,6.195,10.955,11.025,33.47,26.135
RREB1,10.315,17.075,10.515,12.59,14.675 RREB1,10.315,17.075,10.515,12.59,14.675
RXRA,13.38,31.955,56.265,27.41,34.875 RXRA,13.38,31.955,56.265,27.41,34.875
SMAD2,33.815,63.24,29.905,33.295,33.98 SMAD2,33.815,63.24,29.905,33.295,33.98
...@@ -19,7 +16,5 @@ SMAD4,54.035,47.595,59.69,60.76,66.16 ...@@ -19,7 +16,5 @@ SMAD4,54.035,47.595,59.69,60.76,66.16
SP2,6.75,6.92,10.8,8.075,12.81 SP2,6.75,6.92,10.8,8.075,12.81
SP3,16.795,14.03,30.47,22.055,22.605 SP3,16.795,14.03,30.47,22.055,22.605
SP8,1.075,2.045,0.515,0.295,0.05 SP8,1.075,2.045,0.515,0.295,0.05
STAT2,14.685,26.38,24.935,48.685,37.59
TCF3,136.215,124.305,134.515,121.675,163.045 TCF3,136.215,124.305,134.515,121.675,163.045
ZIC3,27.06,95.46,4.98,0.695,0.085 ZIC3,27.06,95.46,4.98,0.695,0.085
ZNF740,7.14,14.92,27.79,28.23,20.005
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symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10 symbol,ES_D0,ES_D2,ES_D5,ES_D7,ES_D10
AHR,1.735,0.75,2.285,6.07,2.955
EGR1,2.3,1.69,1.2,7.685,6.465 EGR1,2.3,1.69,1.2,7.685,6.465
EHF,0.0,0.0,0.035,16.115,6.33 EHF,0.0,0.0,0.035,16.115,6.33
ELF1,6.8,11.92,9.41,29.9,29.37 ELF1,6.8,11.92,9.41,29.9,29.37
ELF3,2.21,3.685,3.88,52.51,13.54
ELF4,0.89,0.73,2.49,0.68,3.03 ELF4,0.89,0.73,2.49,0.68,3.03
FOXP1,9.56,5.68,48.0,80.06,80.08 FOXP1,9.56,5.68,48.0,80.06,80.08
GATA4,0.08,55.85,60.32,168.535,57.74
GLIS3,0.075,0.315,0.16,1.19,10.685 GLIS3,0.075,0.315,0.16,1.19,10.685
ID4,1.555,1.32,84.935,8.975,47.94 ID4,1.555,1.32,84.935,8.975,47.94
INSM1,0.1,0.02,0.6,6.33,30.37 INSM1,0.1,0.02,0.6,6.33,30.37
IRF1,2.89,2.39,0.305,3.11,2.56
KLF4,2.385,0.28,0.21,2.195,0.88 KLF4,2.385,0.28,0.21,2.195,0.88
KLF5,2.025,21.66,6.495,23.005,47.25 KLF5,2.025,21.66,6.495,23.005,47.25
NHLH1,0.155,0.16,0.235,0.675,0.67 NHLH1,0.155,0.16,0.235,0.675,0.67
NR2F1,0.0,0.0,0.26,82.77,53.655 NR2F1,0.0,0.0,0.26,82.77,53.655
PPARG,0.07,0.215,1.295,1.865,2.08 PPARG,0.07,0.215,1.295,1.865,2.08
RARA,6.195,10.955,11.025,33.47,26.135
SMAD3,18.595,12.95,10.205,20.925,35.53 SMAD3,18.595,12.95,10.205,20.925,35.53
SOX3,3.33,0.01,1.255,4.555,0.885 SOX3,3.33,0.01,1.255,4.555,0.885
STAT2,14.685,26.38,24.935,48.685,37.59
TFAP2A,0.01,0.19,2.715,0.39,0.52 TFAP2A,0.01,0.19,2.715,0.39,0.52
ZFX,5.035,5.13,5.505,9.14,11.425 ZFX,5.035,5.13,5.505,9.14,11.425
ZNF740,7.14,14.92,27.79,28.23,20.005
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Histone_TFSEE/k_means_clustering.png

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Histone_TFSEE/k_means_clustering.png

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Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
Histone_TFSEE/k_means_clustering.png
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