Explore projects

Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".

R code for subsample correlation analysis as used in Thody et al. 2022.

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

Gearification of Sybil Lung Cancer Risk Prediction (https://github.com/reginabarzilaygroup/Sybil)

Move Flywheel data to box.com

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)

Tools for processing droplet microfluidics data in R.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.