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An example workflow package for the BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.

Created by Cooper Mellema in Dr. Montillo's Deep Learning Lab University of Texas Southwestern Medical Center Lyda Hill Dept. of Bioinformatics Project centered around using different causal measures to infer Effective connectivity and DL properties

Cooper Mellema - MSTP student Parkinson's MRI & MEG machine learning identification and classification project

An introduction to singularity

A vagrant box containing the setup necessary for building singularity images

This repo is designed to provide a set of scripts that models microbial communities using generalized Lotka-Volterra equations.

Parameter exploration job runner for the BioHPC nucleus cluster.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.