Explore projects

A vagrant box containing the setup necessary for building singularity images

Simple Gears to help you start your own development at UT Southwestern

code for interchangeability by Nancy Obuchowski

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

Analysis scripts for projects related to germ cell tumors.

Generate flow-rate gradients with Fluigent microfluidic pumps.

3 month training notes/walkthrough of excersises

R code for subsample correlation analysis as used in Thody et al. 2022.

cutandrun pipeline from https://github.com/nf-core/cutandrun

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

The runner for cutandrun

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis