Commits · e84e13e8b47ba6f5ddedfba381e72ddb572f3a49 · BICF / Astrocyte / chipseq_analysis

Mar 12, 2019
- Resolve merge conflict. · e84e13e8
  Venkat Malladi authored 6 years ago
  
  e84e13e8
- Merge branch '31-skip_steps' into 'master' · 0817965e
  Venkat Malladi authored 6 years ago
```
Resolve "skip motif search and diff bind"

Closes #31

See merge request !21
```
  0817965e
- Fix tests. · 82a4e5a5
  Venkat Malladi authored 6 years ago
  
  82a4e5a5
- Fix output. · 89d9e085
  Venkat Malladi authored 6 years ago
  
  89d9e085
- Update process name. · cdb7d690
  Venkat Malladi authored 6 years ago
  
  cdb7d690
- Remove references. · 1326f6de
  Venkat Malladi authored 6 years ago
  
  1326f6de
- Fix main. · a7b0a5a8
  Venkat Malladi authored 6 years ago
  
  a7b0a5a8
- Changed name to replicatedPeaks. · f0fbed43
  Venkat Malladi authored 6 years ago
  
  f0fbed43
- Fix sytnax of processes. · c8ff87a7
  Venkat Malladi authored 6 years ago
  
  c8ff87a7
- Fix config. · af60bbd5
  Venkat Malladi authored 6 years ago
  
  af60bbd5
- Fix syntax. · 6ae5df58
  Venkat Malladi authored 6 years ago
  
  6ae5df58
- Add in software report generation. · 8e0a5bd9
  Venkat Malladi authored 6 years ago
  
  8e0a5bd9
- Generate software report. · 9d650a71
  Venkat Malladi authored 6 years ago
  
  9d650a71
- Move skip to first. · ec22feba
  Venkat Malladi authored 6 years ago
  
  ec22feba
- Change overlap peaks back to original. · 8b35fcee
  Venkat Malladi authored 6 years ago
  
  8b35fcee
Mar 11, 2019
- Fix test output. · 65749462
  Venkat Malladi authored 6 years ago
  
  65749462
- Update software report and generate references. · 30853393
  Venkat Malladi authored 6 years ago
  
  30853393
- Flake8 code. · 6b717038
  Venkat Malladi authored 6 years ago
  
  6b717038
- Update to python standards. · ac22d9cf
  Venkat Malladi authored 6 years ago
  
  ac22d9cf
- Add in references.md · ef496a5f
  Venkat Malladi authored 6 years ago
  
  ef496a5f
- Fix spacing. · 50a9336e
  Venkat Malladi authored 6 years ago
  
  50a9336e
- Merge branch 'master' into 21-software_versions · 2ef1bae6
  Venkat Malladi authored 6 years ago
  
  2ef1bae6
- Merge branch 'master' into 31-skip_steps · 5c720694
  Venkat Malladi authored 6 years ago
  
  5c720694
Mar 10, 2019

Merge branch '23-rename_output' into 'master' · 56539919

Venkat Malladi authored 6 years ago

Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"

Closes #23

See merge request !20

56539919

Mar 09, 2019
- Add in software versions. · d0a6516b
  Venkat Malladi authored 6 years ago
  
  d0a6516b
- Fix stage of test. · a8684f42
  Venkat Malladi authored 6 years ago
  
  a8684f42
- Update tests and add a skip test that only runs on branches. · ee0828f0
  Venkat Malladi authored 6 years ago
  
  ee0828f0
- Add in skipping of diffBind and motif search. · aa5566a2
  Venkat Malladi authored 6 years ago
  
  aa5566a2
- Only run certain tests on branches vs master. · d9919554
  Venkat Malladi authored 6 years ago
  
  d9919554
- Fix diff peaks output for single end. · 5f6dd111
  Venkat Malladi authored 6 years ago
  
  5f6dd111
Mar 08, 2019
- Remove subprocess. · 963a6f77
  Venkat Malladi authored 6 years ago
  
  963a6f77
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
- Fix test output. · 6f79eba4
  Venkat Malladi authored 6 years ago
  
  6f79eba4
Mar 07, 2019
- Remove extra bwa command. · b095c05f
  Venkat Malladi authored 6 years ago
  
  b095c05f
- Fix rename. · 276dac3b
  Venkat Malladi authored 6 years ago
  
  276dac3b
Feb 05, 2019
- Pin versions with corrected syntax. · 55a605d1
  Venkat Malladi authored 6 years ago
  
  55a605d1
- Pin versions.; · e193b1a1
  Venkat Malladi authored 6 years ago
  
  e193b1a1
- Update items to install. · f3cfaa92
  Venkat Malladi authored 6 years ago
  
  f3cfaa92
- Add in correct shuffle step. · 29868d56
  Venkat Malladi authored 6 years ago
  
  29868d56
- Fix output directory. #28 . · 81054b5c
  Venkat Malladi authored 6 years ago
  
  81054b5c