Add in software report generation.

workflow/main.nf

@@ -501,7 +501,7 @@ process softwareReport {
 
   script:
   """
-  python3 $baseDir/scripts/software_report.py -o software_versions
+  python3 $baseDir/scripts/generate_versions.py -o software_versions
   python3 $baseDir/scripts/generate_references.py -r $references -o software_references
   """
 }