Commits · af60bbd53f6014e917aaf6d3dc73517b0cb89a41 · BICF / Astrocyte / chipseq_analysis

Mar 12, 2019
- Fix config. · af60bbd5
  Venkat Malladi authored 6 years ago
  
  af60bbd5
- Fix syntax. · 6ae5df58
  Venkat Malladi authored 6 years ago
  
  6ae5df58
- Add in software report generation. · 8e0a5bd9
  Venkat Malladi authored 6 years ago
  
  8e0a5bd9
- Generate software report. · 9d650a71
  Venkat Malladi authored 6 years ago
  
  9d650a71
Mar 11, 2019
- Update software report and generate references. · 30853393
  Venkat Malladi authored 6 years ago
  
  30853393
- Flake8 code. · 6b717038
  Venkat Malladi authored 6 years ago
  
  6b717038
- Update to python standards. · ac22d9cf
  Venkat Malladi authored 6 years ago
  
  ac22d9cf
- Add in references.md · ef496a5f
  Venkat Malladi authored 6 years ago
  
  ef496a5f
- Fix spacing. · 50a9336e
  Venkat Malladi authored 6 years ago
  
  50a9336e
- Merge branch 'master' into 21-software_versions · 2ef1bae6
  Venkat Malladi authored 6 years ago
  
  2ef1bae6
Mar 10, 2019

Merge branch '23-rename_output' into 'master' · 56539919

Venkat Malladi authored 6 years ago

Resolve "Use SampleIds/ Experiment Id as file names throughtout pipeline"

Closes #23

See merge request !20

56539919

Mar 09, 2019
- Add in software versions. · d0a6516b
  Venkat Malladi authored 6 years ago
  
  d0a6516b
- Only run certain tests on branches vs master. · d9919554
  Venkat Malladi authored 6 years ago
  
  d9919554
- Fix diff peaks output for single end. · 5f6dd111
  Venkat Malladi authored 6 years ago
  
  5f6dd111
Mar 08, 2019
- Remove subprocess. · 963a6f77
  Venkat Malladi authored 6 years ago
  
  963a6f77
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
- Fix test output. · 6f79eba4
  Venkat Malladi authored 6 years ago
  
  6f79eba4
Mar 07, 2019
- Remove extra bwa command. · b095c05f
  Venkat Malladi authored 6 years ago
  
  b095c05f
- Fix rename. · 276dac3b
  Venkat Malladi authored 6 years ago
  
  276dac3b
Feb 05, 2019
- Pin versions with corrected syntax. · 55a605d1
  Venkat Malladi authored 6 years ago
  
  55a605d1
- Pin versions.; · e193b1a1
  Venkat Malladi authored 6 years ago
  
  e193b1a1
- Update items to install. · f3cfaa92
  Venkat Malladi authored 6 years ago
  
  f3cfaa92
- Add in correct shuffle step. · 29868d56
  Venkat Malladi authored 6 years ago
  
  29868d56
- Fix output directory. #28 . · 81054b5c
  Venkat Malladi authored 6 years ago
  
  81054b5c
- Update where test files are coming from. · 4bf3f4ac
  Venkat Malladi authored 6 years ago
  
  4bf3f4ac
- Update git ignore. · 280550d3
  Venkat Malladi authored 6 years ago
  
  280550d3
- Update tests and merge. · 8991d010
  Venkat Malladi authored 6 years ago
  
  8991d010
Jan 31, 2019
- Merge branch '27_pdfs_plots' into 'master' · 4a653c8f
  Venkat Malladi authored 6 years ago
```
27 pdfs plots

See merge request !19
```
  4a653c8f
Jan 25, 2019
- edited png to pdf · 419a82ca
  Holly Ruess authored 6 years ago
  
  419a82ca
Jan 22, 2019
- change png to pdf · 4a069abf
  Holly Ruess authored 6 years ago
  
  4a069abf
Jan 19, 2019
- Fix the missing parathesis. · e6955b5c
  Venkat Malladi authored 6 years ago
  
  e6955b5c
- Fix test output. · 511f55b0
  Venkat Malladi authored 6 years ago
  
  511f55b0
Jan 18, 2019
- add Pearson Correlation, make plots pdf · e78c5af1
  Holly Ruess authored 6 years ago
  
  e78c5af1
Jan 15, 2019
- Split tests to make more readable. · 0bd2c988
  Venkat Malladi authored 6 years ago
  
  0bd2c988
- Modify tests. · 89340f9c
  Venkat Malladi authored 6 years ago
  
  89340f9c
Jan 14, 2019
- Fix output directories and file names. · 21aac926
  Venkat Malladi authored 6 years ago
  
  21aac926
- Fix Trim reads output to match. · 483dd61f
  Venkat Malladi authored 6 years ago
  
  483dd61f
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 13, 2019
- Update file name output. · 4aa91a5c
  Venkat Malladi authored 6 years ago
  
  4aa91a5c
- Add return back to xcor. · ba769bcc
  Venkat Malladi authored 6 years ago
  
  ba769bcc