Commits · 7838ab2c886b2d56c06c33266dc25c0602612a44 · BICF / Astrocyte / cellranger_mkfastq

14 Jul, 2020 5 commits
- Align runtim info · 7838ab2c
  Gervaise Henry authored Jul 14, 2020
  
  7838ab2c
- Change bin bash for python scripts to python 3 · 2673f96d
  Gervaise Henry authored Jul 14, 2020
  
  2673f96d
- Update runtime info format · 61f6819c
  Gervaise Henry authored Jul 14, 2020
  
  61f6819c
- Add cluster config to biohpc as standard profile · 5861e5a3
  Gervaise Henry authored Jul 14, 2020
  
  5861e5a3
- Add runtime info · 8798d60f
  Gervaise Henry authored Jul 14, 2020
  
  8798d60f
09 Jul, 2020 1 commit
- Remove ignore-dual-index · 7c71bf3c
  Gervaise Henry authored Jul 09, 2020
  
  7c71bf3c
08 Jul, 2020 1 commit
- Add cellranger 4.0.0 · 364d3816
  Gervaise Henry authored Jul 08, 2020
  
  364d3816
21 Jun, 2020 4 commits
- Fix local process ulimit set · 4a6e4222
  Gervaise Henry authored Jun 21, 2020
  
  4a6e4222
- Version 2.1.4 · d770f29d
  Gervaise Henry authored Jun 21, 2020
  
  d770f29d
- Merge branch 'revert-35c57522' into 'develop' · 9c4cf485
  Gervaise Henry authored Jun 21, 2020
```
Revert "Use base mask I1 = 8n, version 2.1.3"

See merge request !67
```
  9c4cf485
- Revert "Use base mask I1 = 8n, version 2.1.3" · 9f942c94
  Gervaise Henry authored Jun 21, 2020
```
This reverts commit 35c57522
```
  9f942c94
20 Jun, 2020 29 commits
- Update main.nf with version 2.1.3 · 6a4c2aff
  Gervaise Henry authored Jun 20, 2020
  
  6a4c2aff
- Use base mask I1 = 8n, version 2.1.3 · 35c57522
  Gervaise Henry authored Jun 20, 2020
  
  35c57522
- Fix params.dev · e396f80f
  Gervaise Henry authored Jun 20, 2020
  
  e396f80f
- Fix params.dev · 5dc602b6
  Gervaise Henry authored Jun 20, 2020
  
  5dc602b6
- Add dev tracking param, version 2.1.2 · 83373355
  Gervaise Henry authored Jun 20, 2020
  
  83373355
- mkfastq run on high power node, version 2.1.1 · 6b7f1c7f
  Gervaise Henry authored Jun 20, 2020
  
  6b7f1c7f
- Set version to 2.1.0 · 6f038019
  Gervaise Henry authored Jun 20, 2020
  
  6f038019
- Merge branch 'de-containerize' into 'develop' · fc4f6694
  Gervaise Henry authored Jun 20, 2020
```
De containerize

See merge request !62
```
  fc4f6694
- Remove export location settings which causes an error in biohpc · 8d8b4556
  Gervaise Henry authored Jun 20, 2020
  
  8d8b4556
- Update changelog · 2ccd01ab
  Gervaise Henry authored Jun 20, 2020
  
  2ccd01ab
- Add de-containerized note to readme: cloud compatibility · 4fca88d8
  Gervaise Henry authored Jun 20, 2020
  
  4fca88d8
- Remove containers and add modules · 0bdf504a
  Gervaise Henry authored Jun 20, 2020
  
  0bdf504a
- Fix pipeline badges · fbf1a9f7
  Gervaise Henry authored Jun 20, 2020
  
  fbf1a9f7
- Merge branch 'update' into 'develop' · e608b062
  Gervaise Henry authored Jun 20, 2020
```
Update

Closes #37, #38, and #39

See merge request !61
```
  e608b062
- Update readme · 852122be
  Gervaise Henry authored Jun 20, 2020
  
  852122be
- Update changelog · 01dae0ad
  Gervaise Henry authored Jun 20, 2020
  
  01dae0ad
- Update containers to 2.0.0 and rejigger configs · 3bf48fd1
  Gervaise Henry authored Jun 20, 2020
  
  3bf48fd1
- Use Nextflow 20.01.0 for CI · 11e56b55
  Gervaise Henry authored Jun 20, 2020
  
  11e56b55
- Fix cluser profile · cea0f52a
  Gervaise Henry authored Jun 20, 2020
  
  cea0f52a
- Remove any folder from nextflow.config · c202fca2
  Gervaise Henry authored Jun 20, 2020
  
  c202fca2
- Correct CI nextflow profile call · 2b39bbd1
  Gervaise Henry authored Jun 20, 2020
  
  2b39bbd1
- Add back nextflow.config symlink · 7af95023
  Gervaise Henry authored Jun 20, 2020
  
  7af95023
- Add biohpc option for config and remove symlinked nextflow.congig · 4969ae8e
  Gervaise Henry authored Jun 20, 2020
  
  4969ae8e
- Return configs to any dir source and add symlink for nextflow.config into repo root · 1b0fc0de
  Gervaise Henry authored Jun 20, 2020
  
  1b0fc0de
- Hardwire configs for running in repo root · 1649add2
  Gervaise Henry authored Jun 20, 2020
  
  1649add2
- Look for the configs folder anyhere · cb26903b
  Gervaise Henry authored Jun 20, 2020
  
  cb26903b
- Layer configs · a083e6cc
  Gervaise Henry authored Jun 20, 2020
  
  a083e6cc
- Run trackStart local with no container · 83282eb9
  Gervaise Henry authored Jun 20, 2020
  
  83282eb9
- Fix more comments · 6d03f843
  Gervaise Henry authored Jun 20, 2020
  
  6d03f843