Return configs to any dir source and add symlink for nextflow.config into repo root

1b0fc0de · Gervaise Henry · 1649add2 · 1b0fc0de · 1b0fc0de
Commit 1b0fc0de authored Jun 20, 2020 by Gervaise Henry 🤠
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Showing with 7 additions and 6 deletions

nextflow.config nextflow.config +1 -0

workflow/nextflow.config workflow/nextflow.config +6 -6

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--- a/nextflow.config
+++ b/nextflow.config
+workflow/nextflow.config
\ No newline at end of file
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
 profiles {
  standard {
-    includeConfig './workflow/configs/biohpc.config'
+    includeConfig '**/configs/biohpc.config'
  }
  local {
-    includeConfig './worlflow/configs/local.config'
+    includeConfig '**/configs/local.config'
  }
  local {
-    includeConfig './worlflow/configs/cluster.config'
+    includeConfig '**/configs/cluster.config'
  }
  aws {
-    includeConfig './worlflow/configs/aws.config'
+    includeConfig '**/configs/aws.config'
  }
  ondemand {
-    includeConfig ./worlflow/configs/ondemand.config'
+    includeConfig '**/configs/ondemand.config'
  }
  spot {
-    includeConfig './worlflow/configs/spot.config'
+    includeConfig '**/configs/spot.config'
  }
 }