Commit 4fca88d8 authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Add de-containerized note to readme: cloud compatibility

parent 0bdf504a
Pipeline #7349 canceled with stages
in 10 minutes and 4 seconds
......@@ -22,7 +22,10 @@ Additionally, the pipeline is designed to work with Astrocyte Workflow System us
Cloud Compatibility
-------------------
This pipeline is also capable of being run on AWS. To do so:
This pipeline is also capable of being run on AWS.\
**NOTE: This pipeline has been reverted to a non-containerized version to work on Astrocyte. Tag `containerized` for the last working containerized version which will be compatible with AWS.**
To do so:
* Build a AWS batch queue and environment either manually or with [aws-cloudformantion](https://console.aws.amazon.com/cloudformation/home?#/stacks/new?stackName=Nextflow&templateURL=https://s3.amazonaws.com/aws-genomics-workflows/templates/nextflow/nextflow-aio.template.yaml)
* In the aws configs in `workflow/configs/`:
* Replace workDir with the S3 bucket generated
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