Look for the configs folder anyhere

workflow/nextflow.config

 profiles {
   standard {
-    includeConfig 'configs/biohpc.config'
+    includeConfig '**/configs/biohpc.config'
   }
   local {
-    includeConfig 'configs/local.config'
+    includeConfig '**/configs/local.config'
   }
   local {
-    includeConfig 'configs/cluster.config'
+    includeConfig '**/configs/cluster.config'
   }
   aws {
-    includeConfig 'configs/aws.config'
+    includeConfig '**/configs/aws.config'
   }
   ondemand {
-    includeConfig 'configs/ondemand.config'
+    includeConfig '**/configs/ondemand.config'
   }
   spot {
-    includeConfig 'configs/spot.config'
+    includeConfig '**/configs/spot.config'
   }
 }