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Commit 2b39bbd1 authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Correct CI nextflow profile call

parent 7af95023
Pipeline #7339 failed with stages
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.gitlab-ci.yml
View file @ 2b39bbd1
......@@ -27,7 +27,7 @@ astrocyte_check:
simple_1FC:
stage: simple
script:
- nextflow run workflow/main.nf -config biohpc,cluster --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" --ci true
- nextflow run workflow/main.nf -profile biohpc,cluster --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" --ci true
##- pytest -m simple1
artifacts:
name: "$CI_JOB_NAME"
......@@ -44,7 +44,7 @@ simple_1FC:
simple_2FC:
stage: simple
script:
- nextflow run workflow/main.nf -config biohpc,cluster --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" --ci true
- nextflow run workflow/main.nf -profile biohpc,cluster --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" --ci true
##- pytest -m simple2
artifacts:
name: "$CI_JOB_NAME"
......
nextflow.config deleted 120000 → 0
View file @ 7af95023
workflow/nextflow.config
\ No newline at end of file
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