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BICF
Astrocyte
cellranger_mkfastq
Commits
2b39bbd1
Commit
2b39bbd1
authored
Jun 20, 2020
by
Gervaise Henry
🤠
Browse files
Correct CI nextflow profile call
parent
7af95023
Pipeline
#7339
failed with stages
in 9 seconds
Changes
2
Pipelines
1
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.gitlab-ci.yml
View file @
2b39bbd1
...
...
@@ -27,7 +27,7 @@ astrocyte_check:
simple_1FC
:
stage
:
simple
script
:
-
nextflow run workflow/main.nf -
config
biohpc,cluster --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" --ci
true
-
nextflow run workflow/main.nf -
profile
biohpc,cluster --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" --ci
true
##- pytest -m simple1
artifacts
:
name
:
"
$CI_JOB_NAME"
...
...
@@ -44,7 +44,7 @@ simple_1FC:
simple_2FC
:
stage
:
simple
script
:
-
nextflow run workflow/main.nf -
config
biohpc,cluster --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" --ci
true
-
nextflow run workflow/main.nf -
profile
biohpc,cluster --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" --ci
true
##- pytest -m simple2
artifacts
:
name
:
"
$CI_JOB_NAME"
...
...
nextflow.config
deleted
120000 → 0
View file @
7af95023
workflow
/
nextflow
.
config
\ No newline at end of file
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