Commits · 4506e71177c4f2fd79ced4c68035dfc69597b3c9 · BICF / Astrocyte / cellranger_mkfastq

Jun 20, 2020
- No CI retrys · fa4b88e3
  Gervaise Henry authored 4 years ago
  
  fa4b88e3
- Fix CI:astrocyte to match new runner settings · 1d6fd7f0
  Gervaise Henry authored 4 years ago
  
  1d6fd7f0
Dec 31, 2019
- Fix simple2 ci · d1f74a99
  Gervaise Henry authored 5 years ago
  
  d1f74a99
- Fix CI to use standard config (biohpc with cluster) · ba85c18a
  Gervaise Henry authored 5 years ago
  
  ba85c18a
- Make ready for merge · fe8fef7f
  Gervaise Henry authored 5 years ago
  
  fe8fef7f
- Squash many small commits to get working · 428d3688
  Gervaise Henry authored 5 years ago
  
  428d3688
Dec 27, 2019
- Remove singularity automount from biohpc config · 028dbf32
  Gervaise Henry authored 5 years ago
  
  028dbf32
- Temporarily remove pytests and multiqc artifact · ef176f42
  Gervaise Henry authored 5 years ago
  
  ef176f42
Dec 26, 2019
- Add BioHPC profile to CI · e0069eaf
  Gervaise Henry authored 5 years ago
  
  e0069eaf
- Add docker containers for most processes · 1536d759
  Gervaise Henry authored 5 years ago
  
  1536d759
Dec 20, 2019
- Update .gitlab-ci.yml · 83d88a4e
  Gervaise Henry authored 5 years ago
  
  83d88a4e
- Remove concurrency test · 2cd079e6
  Gervaise Henry authored 5 years ago
  
  2cd079e6
- Test concurrency fix · 1fd8b392
  Gervaise Henry authored 5 years ago
  
  1fd8b392
Oct 08, 2019
- Update CI nextflow mod to 19.09.0 for Tower integration · a031a1d7
  Gervaise Henry authored 5 years ago
  
  a031a1d7
Oct 01, 2019
- Add ghenry token for Nextflow Tower to biohpc.config and update Nextflow... · 1eb5757e
  Gervaise Henry authored 5 years ago
```
Add ghenry token for Nextflow Tower to biohpc.config and update Nextflow version (and include tower) in CI
```
  1eb5757e
Aug 05, 2019
- remove except from CI · 90cc2803
  Jeremy Mathews authored 5 years ago
  
  90cc2803
- update .gitlab CI · 0e6e8806
  Jeremy Mathews authored 5 years ago
  
  0e6e8806
Jul 31, 2019
- Update .gitlab-ci.yml · 6dda9f06
  Gervaise Henry authored 5 years ago
  
  6dda9f06
- add refs to except in CI yml · 4986fa6e
  Jeremy Mathews authored 5 years ago
  
  4986fa6e
- fix yml CI · d79a2033
  Jeremy Mathews authored 5 years ago
  
  d79a2033
- Add Exceptions for md files · fe34bd57
  Jeremy Mathews authored 5 years ago
  
  fe34bd57
- update paths · 1474eb3e
  Jeremy Mathews authored 5 years ago
  
  1474eb3e
- change paths to astrocyte output · c159bf79
  Jeremy Mathews authored 5 years ago
  
  c159bf79
- update paths in artifacts · df3cceba
  Jeremy Mathews authored 5 years ago
  
  df3cceba
- add multiqc report to CI artifacts · 33da86ef
  Jeremy Mathews authored 5 years ago
  
  33da86ef
Jul 23, 2019
- Update .gitlab-ci.yml · 2a53502c
  Gervaise Henry authored 5 years ago
  
  2a53502c
Jul 22, 2019
- restructre pytests · 8ebc05b9
  Jeremy Mathews authored 5 years ago
  
  8ebc05b9
- install pip · 42954333
  Jeremy Mathews authored 5 years ago
  
  42954333
- comment out design · f761cc15
  Jeremy Mathews authored 5 years ago
  
  f761cc15
- Add tests for all sections of pipeline · 6955255a
  Jeremy Mathews authored 5 years ago
  
  6955255a
Jul 19, 2019
- Add pytest · 6cef4fe6
  Jeremy Mathews authored 5 years ago
  
  6cef4fe6
Apr 27, 2019
- Update .gitlab-ci.yml · 7aa16d3d
  Gervaise Henry authored 5 years ago
  
  7aa16d3d
- Update .gitlab-ci.yml · f2e5ddd5
  Gervaise Henry authored 5 years ago
  
  f2e5ddd5
- Update .gitlab-ci.yml · bd871022
  Gervaise Henry authored 5 years ago
  
  bd871022
- Update .gitlab-ci.yml · 49a5fdff
  Gervaise Henry authored 5 years ago
  
  49a5fdff
- Revert "Update .gitlab-ci.yml" · 967c8509
  Gervaise Henry authored 5 years ago
```
This reverts commit 4b0bff5a
```
  967c8509
- Update .gitlab-ci.yml · 4b0bff5a
  Gervaise Henry authored 5 years ago
  
  4b0bff5a
- Update .gitlab-ci.yml · f1b234cf
  Gervaise Henry authored 5 years ago
  
  f1b234cf
- Add artifacts expiration in CI · 8bf1298e
  Gervaise Henry authored 5 years ago
  
  8bf1298e
- Don't run 1FC test with tag · f8f9a943
  Gervaise Henry authored 5 years ago
  
  f8f9a943