.gitlab-ci.yml

docs/references.md

workflow/conf/aws_ondemand.config

workflow/conf/aws_spot.config

workflow/conf/biohpc.config

workflow/conf/biohpc_local.config

workflow/main.nf

workflow/nextflow.config

workflow/scripts/fastqc.sh

workflow/scripts/generate_versions.py

workflow/scripts/versions_bcl2fastq.sh

workflow/scripts/versions_cellranger.sh

workflow/scripts/versions_fastqc.sh

workflow/scripts/versions_pigz.sh

workflow/scripts/versions_python.sh