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Commit e0069eaf authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add BioHPC profile to CI

parent 1536d759
3 merge requests!59Develop,!58Develop,!5739 aws
Pipeline #5358 failed with stages
in 19 seconds
......@@ -27,7 +27,7 @@ astrocyte_check:
simple_1FC:
stage: simple
script:
- nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- pytest -m simple1
artifacts:
name: "$CI_JOB_NAME"
......@@ -44,7 +44,7 @@ simple_1FC:
simple_2FC:
stage: simple
script:
- nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- pytest -m simple2
artifacts:
name: "$CI_JOB_NAME"
......
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