From e0069eaf4a4120fce64fbbc00dc38fc44e922439 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 26 Dec 2019 23:10:40 -0600
Subject: [PATCH] Add BioHPC profile to CI
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 33665ec..bad0874 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -27,7 +27,7 @@ astrocyte_check:
simple_1FC:
stage: simple
script:
- - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
+ - nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- pytest -m simple1
artifacts:
name: "$CI_JOB_NAME"
@@ -44,7 +44,7 @@ simple_1FC:
simple_2FC:
stage: simple
script:
- - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
+ - nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
- pytest -m simple2
artifacts:
name: "$CI_JOB_NAME"
--
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