Add ghenry token for Nextflow Tower to biohpc.config and update Nextflow...

Add ghenry token for Nextflow Tower to biohpc.config and update Nextflow version (and include tower) in CI

.gitlab-ci.yml

@@ -2,7 +2,7 @@ before_script:
   - module load astrocyte
   - module load python/3.6.1-2-anaconda
   - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
-  - module load nextflow/0.31.1_Ignite
+  - module load nextflow/19.07.0
   - mkdir -p test_data/simple1
   - mkdir -p test_data/simple2
   - ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple1/* test_data/simple1/
@@ -26,7 +26,7 @@ astrocyte_check:
 simple_1FC:
   stage: simple
   script:
-    - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv"
+    - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
     - pytest -m simple1
   artifacts:
     name: "$CI_JOB_NAME"
@@ -43,7 +43,7 @@ simple_1FC:
 simple_2FC:
   stage: simple
   script:
-    - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv"
+    - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower
     - pytest -m simple2
   artifacts:
     name: "$CI_JOB_NAME"

workflow/conf/biohpc.config

@@ -45,3 +45,8 @@ report {
   enabled = true
   file = 'report.html'
 }
+
+tower {
+  accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f'
+  enabled = true
+}