diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 6f8e6eada75ee0f05e747b122b6392434611d445..3ab69b73c9dc5af39b6ac2478e787ab1fead234e 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,7 +2,7 @@ before_script: - module load astrocyte - module load python/3.6.1-2-anaconda - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1 - - module load nextflow/0.31.1_Ignite + - module load nextflow/19.07.0 - mkdir -p test_data/simple1 - mkdir -p test_data/simple2 - ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_mkfastq/simple1/* test_data/simple1/ @@ -26,7 +26,7 @@ astrocyte_check: simple_1FC: stage: simple script: - - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" + - nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower - pytest -m simple1 artifacts: name: "$CI_JOB_NAME" @@ -43,7 +43,7 @@ simple_1FC: simple_2FC: stage: simple script: - - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" + - nextflow run workflow/main.nf --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv" -with-tower - pytest -m simple2 artifacts: name: "$CI_JOB_NAME" diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index 09387c65e70d369a7f796fb6096c6925547d34f5..fa205014b8ac199d984176966f4ee912bf4b256c 100755 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -45,3 +45,8 @@ report { enabled = true file = 'report.html' } + +tower { + accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f' + enabled = true +}