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Commit ba85c18a authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix CI to use standard config (biohpc with cluster)

parent fe8fef7f
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3 merge requests!59Develop,!58Develop,!5739 aws
Pipeline #5484 failed with stages
in 5 minutes and 35 seconds
......@@ -27,7 +27,7 @@ astrocyte_check:
simple_1FC:
stage: simple
script:
- nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv"
- nextflow run workflow/main.nf --bcl "test_data/simple1/*.tar.gz" --designFile "test_data/simple1/cellranger-tiny-bcl-simple-1_2_0.csv"
##- pytest -m simple1
artifacts:
name: "$CI_JOB_NAME"
......@@ -44,7 +44,7 @@ simple_1FC:
simple_2FC:
stage: simple
script:
- nextflow run workflow/main.nf -profile biohpc --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv"
- nextflow run workflow/main.nfc --bcl "test_data/simple2/*.tar.gz" --designFile "test_data/simple2/cellranger-tiny-bcl-simple-1_2_0.csv"
##- pytest -m simple2
artifacts:
name: "$CI_JOB_NAME"
......
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