Commits · 1e4a59464356c5c87909c6a5a8aec93992680574 · BICF / Astrocyte / cellranger_count

Aug 14, 2020
- Insatll optparse if not present · 1e4a5946
  Gervaise Henry authored 4 years ago
  
  1e4a5946
- Fix CI · f3feba08
  Gervaise Henry authored 4 years ago
  
  f3feba08
- Fix CI · 4bafd4ec
  Gervaise Henry authored 4 years ago
  
  4bafd4ec
- Git module and container unit tests for seurat · 7599692c
  Gervaise Henry authored 4 years ago
  
  7599692c
- Update configs · d262bb16
  Gervaise Henry authored 4 years ago
  
  d262bb16
- Update readme for vizFiles param · cc90ce91
  Gervaise Henry authored 4 years ago
  
  cc90ce91
- Only run downstreamViz on param · 4e3398c6
  Gervaise Henry authored 4 years ago
  
  4e3398c6
- Change output of seurat objects · 3206a051
  Gervaise Henry authored 4 years ago
  
  3206a051
- Add Seurat version to report and fix Seurat itteration · d907644c
  Gervaise Henry authored 4 years ago
  
  d907644c
Aug 13, 2020
- Add downstreamViz processes to configs · fd188a99
  Gervaise Henry authored 4 years ago
  
  fd188a99
- Add downstreamViz (seurat) generation · ee609792
  Gervaise Henry authored 4 years ago
  
  ee609792
- Merge branch 'cellranger-4.0.0_ref-2020A' into '50-seurat.object' · 83890557
  Gervaise Henry authored 4 years ago
```
Cellranger 4.0.0 ref 2020 a

See merge request !75
```
  83890557
Aug 04, 2020
- Fix module/container artifact paths · 60f343c4
  Gervaise Henry authored 4 years ago
  
  60f343c4
- Remove periods from module/container unit test ids · 876a4c77
  Gervaise Henry authored 4 years ago
  
  876a4c77
- Remove underscores from module/container unit test ids · f735a275
  Gervaise Henry authored 4 years ago
  
  f735a275
- Indevidualize module/container unit test run names · 1b7e4147
  Gervaise Henry authored 4 years ago
  
  1b7e4147
- Add split unit tests for modules and containers · 8e7ac5e9
  Gervaise Henry authored 4 years ago
  
  8e7ac5e9
Jul 13, 2020
- Finish fixing configs · 26460c2c
  Gervaise Henry authored 4 years ago
  
  26460c2c
- Fix configs and refs · 51ff8a09
  Gervaise Henry authored 4 years ago
  
  51ff8a09
- Fix configs · abd059b2
  Gervaise Henry authored 4 years ago
  
  abd059b2
- Fix expectcells for 400 · dcaa3068
  Gervaise Henry authored 4 years ago
  
  dcaa3068
- Fix reflocation for 400 · ed39e1ac
  Gervaise Henry authored 4 years ago
  
  ed39e1ac
Jul 08, 2020
- Add count400 to configs · bc18bf72
  Gervaise Henry authored 4 years ago
  
  bc18bf72
- Add cellranger 4.0.0 toci · 66568000
  Gervaise Henry authored 4 years ago
  
  66568000
- Update CI for 4.0.0/2020-A · 5a42f61b
  Gervaise Henry authored 4 years ago
  
  5a42f61b
- Add cellranger 4.0.0 · 3e1e1816
  Gervaise Henry authored 4 years ago
  
  3e1e1816
Jun 21, 2020
- Fix multi sample, local ulimit set, v2.1.1 · 079739df
  Gervaise Henry authored 4 years ago
  
  079739df
- Fix multiqc config · 67eb6554
  Gervaise Henry authored 4 years ago
  
  67eb6554
- Fix module load and ulimits · 3d5b1095
  Gervaise Henry authored 4 years ago
  
  3d5b1095
- Version 2.1.0 · 9a2e93c1
  Gervaise Henry authored 4 years ago
  
  9a2e93c1
- Fix cluster process passing · 80771512
  Gervaise Henry authored 4 years ago
  
  80771512
- Fix version and references script passing · 7bc7c3fd
  Gervaise Henry authored 4 years ago
  
  7bc7c3fd
- Copy filename_checkScript int each input for cellranger processes · 2622d647
  Gervaise Henry authored 4 years ago
  
  2622d647
- Make script files inputs · 986b1246
  Gervaise Henry authored 4 years ago
  
  986b1246
- Merge branch 'de-containerize' into 'develop' · bca7b52f
  Gervaise Henry authored 4 years ago
```
Update configs folder name

See merge request !72
```
  bca7b52f
- Update configs folder name · a455db0d
  Gervaise Henry authored 4 years ago
  
  a455db0d
- Merge branch 'de-containerize' into 'develop' · 092561b6
  Gervaise Henry authored 4 years ago
```
De containerize

See merge request !71
```
  092561b6
- Remove quiet option from nextflow run ci · 3530bc3b
  Gervaise Henry authored 4 years ago
  
  3530bc3b
- De-containerize (remove cellranger 2.1.1 because no BioHPC module) · 554ef719
  Gervaise Henry authored 4 years ago
  
  554ef719
- Major cleanup update · 5677b2e2
  Gervaise Henry authored 4 years ago
  
  5677b2e2