Fix version and references script passing

workflow/main.nf

@@ -82,8 +82,8 @@ outDir = params.outDir
 // Define script files
 check_designScript = Channel.fromPath("$baseDir/scripts/check_design.py")
 filename_checkScript = Channel.fromPath("$baseDir/scripts/filename_check.sh")
-versionsScript = Channel.fromPath("$baseDir/scripts/generate_versions.py")
-referencesScript = Channel.fromPath("$baseDir/scripts/generate_references.py")
+generate_versionsScript = Channel.fromPath("$baseDir/scripts/generate_versions.py")
+generate_referencesScript = Channel.fromPath("$baseDir/scripts/generate_references.py")
 versions_pythonScript = Channel.fromPath("$baseDir/scripts/versions_python.sh")
 
 // Define report files
@@ -328,8 +328,8 @@ process versions {
 
   input:
     file versions_pythonScript
-    file referencesScript
-    file versions_pythonScript
+    file generate_versionsScript
+    file generate_referencesScript
 
   output:
     file("*.yaml") into yamlPaths