From 7bc7c3fd9a6b299d6a29e5baa29b19fa0d7e3798 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 21 Jun 2020 14:47:47 -0500
Subject: [PATCH] Fix version and references script passing
---
workflow/main.nf | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 2a99368..dbbb15e 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -82,8 +82,8 @@ outDir = params.outDir
// Define script files
check_designScript = Channel.fromPath("$baseDir/scripts/check_design.py")
filename_checkScript = Channel.fromPath("$baseDir/scripts/filename_check.sh")
-versionsScript = Channel.fromPath("$baseDir/scripts/generate_versions.py")
-referencesScript = Channel.fromPath("$baseDir/scripts/generate_references.py")
+generate_versionsScript = Channel.fromPath("$baseDir/scripts/generate_versions.py")
+generate_referencesScript = Channel.fromPath("$baseDir/scripts/generate_references.py")
versions_pythonScript = Channel.fromPath("$baseDir/scripts/versions_python.sh")
// Define report files
@@ -328,8 +328,8 @@ process versions {
input:
file versions_pythonScript
- file referencesScript
- file versions_pythonScript
+ file generate_versionsScript
+ file generate_referencesScript
output:
file("*.yaml") into yamlPaths
--
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