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Commit 66568000 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add cellranger 4.0.0 toci

parent 5a42f61b
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2 merge requests!78Develop,!76Resolve "Generate Raw RDS file"
Pipeline #7531 passed with stages
in 8 minutes and 16 seconds
......@@ -105,6 +105,31 @@ astrocyte_cli:
when:
- always
4.0.0_test:
stage: container_test
only:
- branches
except:
refs:
- develop
- master
- tags
script:
- module load cellranger/4.0.0
- cellranger count --id=test --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts:
name: "$CI_JOB_NAME"
when: always
paths:
- develop
- master
- test/outs/web_summary.html
expire_in: 2 days
retry:
max: 0
when:
- always
GRCh38-2020A:
stage: reference_test
only:
......
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