diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 91db92473d6a299f7173e93cdc278d4c022ec75e..06213a0795994e0662c8a3e3ff75a4cfac134cdf 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -105,6 +105,31 @@ astrocyte_cli: when: - always +4.0.0_test: + stage: container_test + only: + - branches + except: + refs: + - develop + - master + - tags + script: + - module load cellranger/4.0.0 + - cellranger count --id=test --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2 + artifacts: + name: "$CI_JOB_NAME" + when: always + paths: + - develop + - master + - test/outs/web_summary.html + expire_in: 2 days + retry: + max: 0 + when: + - always + GRCh38-2020A: stage: reference_test only: