From 665680000c174529318f2bf40c5544d7f744e9a3 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 8 Jul 2020 17:25:35 -0500
Subject: [PATCH] Add cellranger 4.0.0 toci
---
.gitlab-ci.yml | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 91db924..06213a0 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -105,6 +105,31 @@ astrocyte_cli:
when:
- always
+4.0.0_test:
+ stage: container_test
+ only:
+ - branches
+ except:
+ refs:
+ - develop
+ - master
+ - tags
+ script:
+ - module load cellranger/4.0.0
+ - cellranger count --id=test --transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
+ artifacts:
+ name: "$CI_JOB_NAME"
+ when: always
+ paths:
+ - develop
+ - master
+ - test/outs/web_summary.html
+ expire_in: 2 days
+ retry:
+ max: 0
+ when:
+ - always
+
GRCh38-2020A:
stage: reference_test
only:
--
GitLab