GitLab

A skeleton repo acting as a host registry for various images used in Astrocyte.

basic useful copy-and-paste type codes

Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

An example workflow package for the BioHPC Astrocyte workflow engine.

Testing for data normality and variability, reporting sample sizes, and visualizing data groups.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

Low-frequency small variants and large deletions detection from mitochondrial DNA deep sequencing experiments.

PySlurm with fixes on the 16.05.5 branch to allow use with Python 3.6+

tes

This is a project to show an example CI pipeline.