GitLab

A vagrant box containing the setup necessary for building singularity images

additional steps are necessary to build HON within UTSW due to proxy and firewalls

This is a folder for my 3 months training.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

Simple Gears to help you start your own development at UT Southwestern

code for interchangeability by Nancy Obuchowski

A single-cell RNA-seq analysis workflow for data stored on the BioHPC using CellRanger and Seurat.

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

A repository for code to replicate the analysis of single cell data from female human urethra.

Analysis scripts for projects related to germ cell tumors.

A host registry for various images used in Astrocyte

Generate flow-rate gradients with Fluigent microfluidic pumps.

A Flywheel gear to import MEG metadata from files