GitLab

Know-how, trouble-shooting, work log, and memo, etc.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

This repo is designed to provide a set of scripts that models microbial communities using generalized Lotka-Volterra equations.

The flash-community FTP project allows users to share their files with guests.

Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)

Parameter exploration job runner for the BioHPC nucleus cluster.

Testing for data normality and variability, reporting sample sizes, and visualizing data groups.

Low-frequency small variants and large deletions detection from mitochondrial DNA deep sequencing experiments.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.