This repo is designed to provide a set of scripts that models microbial communities using generalized Lotka-Volterra equations.

This project contains all code used in our preprint, bioarxiv.org/content/10.1101/2020.06.04.134494v1

The flash-community FTP project allows users to share their files with guests.

Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)

Parameter exploration job runner for the BioHPC nucleus cluster.

Testing for data normality and variability, reporting sample sizes, and visualizing data groups.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

Phillips replacement

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application