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R code for subsample correlation analysis as used in Thody et al. 2022.
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3 month training notes/walkthrough of excersises
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Analysis scripts for projects related to germ cell tumors.
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This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"
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This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"
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The runner for cutandrun
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cutandrun pipeline from https://github.com/nf-core/cutandrun
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additional steps are necessary to build HON within UTSW due to proxy and firewalls
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basic useful copy-and-paste type codes
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Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.
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