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This repo is designed to provide a set of scripts that models microbial communities using generalized Lotka-Volterra equations.
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This project contains all code used in our preprint, bioarxiv.org/content/10.1101/2020.06.04.134494v1
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The flash-community FTP project allows users to share their files with guests.
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Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)
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Parameter exploration job runner for the BioHPC nucleus cluster.
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Testing for data normality and variability, reporting sample sizes, and visualizing data groups.
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An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.
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Phillips replacement
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Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application
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