Commits · b03c7f3f0476cc586205d3ba07a6bcda3a70cc90 · NGS CLIA Lab / process_scripts

Dec 04, 2017
- adding somatic code · b03c7f3f
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.8
  
  b03c7f3f
- somatic union updates · 06eb1972
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.7
  
  06eb1972
Nov 28, 2017
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · b9d65518
  Brandi Cantarel authored 7 years ago
  
  b9d65518
- adding space to if · 70fad152
  Brandi Cantarel authored 7 years ago
  
  70fad152
- final bams used for somatic tools · bc4836c1
  Chelsea Raulerson authored 7 years ago
  
  bc4836c1
- fix varscan option · 87e71f14
  Chelsea Raulerson authored 7 years ago
  
  87e71f14
Nov 27, 2017
- somatic caller bash script · 3f0afcc5
  Chelsea Raulerson authored 7 years ago
  
  3f0afcc5
Nov 20, 2017
- update unioncode platypus bug · 87557454
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.6
  
  87557454
Nov 17, 2017
- umi RG bug · 679cd228
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.5
  
  679cd228
Nov 15, 2017
- typo script path bamqc.sh · 2c1dee61
  Brandi Cantarel authored 7 years ago
  
  2c1dee61
Nov 13, 2017
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · fe2b5933
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.4
  
  fe2b5933
- debug variant calling · c7aa1da1
  Brandi Cantarel authored 7 years ago
  
  c7aa1da1
Nov 10, 2017
- typo markdups · 0ccf418d
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.3
  
  0ccf418d
- update for variant calling debugging · 3d9955f6
  Brandi Cantarel authored 7 years ago
  
  3d9955f6
Nov 06, 2017
- prepare_release · 1fa984ad
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.2
  
  1fa984ad
- updating union · 28fc369f
  Brandi Cantarel authored 7 years ago
  
  publish_0.0.1
  
  28fc369f
- adding union code · d58e9577
  Brandi Cantarel authored 7 years ago
  
  d58e9577
Nov 03, 2017
- debugging germlinevc/union · fff6d8b9
  Brandi Cantarel authored 7 years ago
  
  fff6d8b9
Oct 31, 2017
- add annotvcf.sh · a17ae372
  Brandi Cantarel authored 7 years ago
  
  a17ae372
- typo germline_vc.sh · c90d2d4e
  Brandi Cantarel authored 7 years ago
  
  c90d2d4e
Oct 30, 2017
- merge changes bamqc.sh · 10d85ff7
  Brandi Cantarel authored 7 years ago
  
  10d85ff7
- update dnaalignment · aaef66b3
  Brandi Cantarel authored 7 years ago
  
  aaef66b3
- add variant calling · bf478088
  Brandi Cantarel authored 7 years ago
  
  bf478088
- adding variantcalling · 3a071c54
  Brandi Cantarel authored 7 years ago
  
  3a071c54
Oct 28, 2017
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/process_scripts · f649f687
  Brandi Cantarel authored 7 years ago
  
  f649f687
- trimgalore bug · b98f9123
  Brandi Cantarel authored 7 years ago
  
  b98f9123
Oct 27, 2017
- upload alignment processes · 9e9fa0e7
  Brandi Cantarel authored 7 years ago
  
  9e9fa0e7
- options trimgalore · 3090fd6a
  Brandi Cantarel authored 7 years ago
  
  3090fd6a
Oct 26, 2017
- adding cnvkit · ba09efe0
  Brandi Cantarel authored 7 years ago
  
  ba09efe0
- add markdups · 15a6a639
  Brandi Cantarel authored 7 years ago
  
  15a6a639
Oct 23, 2017
- create_directories · eb46c4a5
  Brandi Cantarel authored 7 years ago
  
  eb46c4a5
- Initial commit · 8e6506d2
  Brandi Cantarel authored 7 years ago
  
  8e6506d2