Initial commit (8e6506d2) · Commits · NGS CLIA Lab / process_scripts · GitLab

Skip to content

GitLab

Explore

Sign in

Primary navigation

Project

P

process_scripts
- Activity
- Members
- Labels
- Issues
  0
- Issue boards
- Milestones
- Iterations
- Wiki
- Requirements
- Releases
- Container Registry
- Environments
- Incidents
- Service Desk

Snippets Groups Projects

NGS CLIA Lab
process_scripts
Commits
8e6506d2

Commit 8e6506d2 authored 7 years ago by

Brandi Cantarel

Downloads
- Patches
- Plain Diff

Initial commit

parents

Branches

Tags

No related merge requests found

Changes 28

Hide whitespace changes

Inline Side-by-side

Showing

DEA_htseq.R 236 additions, 0 deletions

DEA_htseq.R
bamqc.sh 9 additions, 0 deletions

bamqc.sh
baysic_blc.pl 79 additions, 0 deletions

baysic_blc.pl
baysic_indel.pl 80 additions, 0 deletions

baysic_indel.pl
baysic_snp.pl 83 additions, 0 deletions

baysic_snp.pl
build_ballgown.R 16 additions, 0 deletions

build_ballgown.R
calculate_depthcov.pl 79 additions, 0 deletions

calculate_depthcov.pl
check_designfile.pl 63 additions, 0 deletions

check_designfile.pl
concat_cts.pl 101 additions, 0 deletions

concat_cts.pl
concat_edgeR.pl 31 additions, 0 deletions

concat_edgeR.pl
concat_fpkm.pl 63 additions, 0 deletions

concat_fpkm.pl
covstats.pl 66 additions, 0 deletions

covstats.pl
dea.R 236 additions, 0 deletions

dea.R
gencode_genename.pl 22 additions, 0 deletions

gencode_genename.pl
hisat.sh 22 additions, 0 deletions

hisat.sh
lca.R 161 additions, 0 deletions

lca.R
parse_flagstat.pl 52 additions, 0 deletions

parse_flagstat.pl
parse_seqqc.pl 195 additions, 0 deletions

parse_seqqc.pl
parse_svresults.pl 116 additions, 0 deletions

parse_svresults.pl
parse_trimreport.pl 31 additions, 0 deletions

parse_trimreport.pl

with 1741 additions and 0 deletions

0% or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment