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Created with Raphaël 2.2.020Sep18531Aug302812116532131Jul3029282725242221201917151330Jun23193231May2928262219130Apr2221139730Mar242019181297319Feb1817141297529Jan23222118Dec218Nov21Oct26Sep191713530Aug29282217141312Jul827Jun1730May2922212015108764129Apr261916115429Mar21181211228Feb2720111052131Jan292423820Dec27Nov251615927Oct191295120Sep19831Aug30242295227Jul252318161297620Jun21May12982127Apr17161026Mar221612965228Feb2421181614131126Jan2515Dec865428Nov2720171513106331Oct3028272623alter pindel filteringupdate abraadding abra2update module load; platypus update sampleidmove all export PATH under -z isdockerse/pe fixversion_1.0.3version_1.0.3update biohpc varversion_1.0.2version_1.0.2add is docker to annot and update AD field for platypusfb parallel options for BioHPC/Cloudupdates variant calling isdocker; module loadadding if is dockerupdate small docker/dnanexus incompatobilitybash line errorupdate checkmate script locationadding checkmate bash scriptstarfusion mergestar fusion docker agfusion file formatstar fusion mergeagfusion db locationstar fusion output changes 1.9Update starfusion.shupdates star fusion name change starfusion outfilesprint starfusionupdate gatk runnerupdate snpeff ref; remove unnecessary ref data checksupdate bedtools genomecov to reduce memory usage bugupdate strelka fileupdate mutect to take intervals remove paralleladding options for tbed fileupdate options for tbedadding cbioportal general codeupdate warning in perl -iupdate starfusion/agfusion 95trim galore bug withfpkm subset bug fixedperl script errorremove biohpc hardcoded pathfull path in fpkm subsetadd baseDir to genect_rnaseq/geneabundance.sh