alignment/bamqc.sh

alignment/calculate_depthcov.pl

alignment/covstats.pl

alignment/hisat.sh

alignment/parse_flagstat.pl

alignment/parse_seqqc.pl

alignment/plot_hist_genocov.R

alignment/star_aligner.sh

alignment/starfusion.sh

alignment/subset_bam.pl

baysic_blc.pl

baysic_indel.pl

baysic_snp.pl

diff_exp/DEA_htseq.R

diff_exp/build_ballgown.R

diff_exp/concat_edgeR.pl

diff_exp/dea.R

diff_exp/gencode_genename.pl

genect_rnaseq/concat_cts.pl

genect_rnaseq/concat_fpkm.pl