Merge requests · GUDMAP_RBK / RNA-seq

Merge trains

v0.0.1

!37 · created Aug 11, 2020 by Gervaise Henry v0.0.1 master
updated Aug 11, 2020
Resolve "process_qc" 6 of 8 checklist items completed

!33 · created Jul 14, 2020 by Gervaise Henry v0.0.1
Doing
updated Jul 15, 2020
Add extra params for tracking

!30 · created Apr 27, 2020 by Gervaise Henry v0.0.1
updated Apr 27, 2020
Track.pipeline 0 of 8 checklist items completed

!29 · created Apr 25, 2020 by Gervaise Henry v0.0.1
enhancement
updated Apr 25, 2020
Resolve "Move inference to start of pipeline" 5 of 6 checklist items completed

!28 · created Apr 22, 2020 by Gervaise Henry v0.0.1
Doing enhancement
- Merged
- 3
updated Apr 24, 2020
Resolve "Chunk bam for parallel tin calculation" 4 of 8 checklist items completed

!26 · created Mar 31, 2020 by Jonathan Gesell v0.0.1
CodeReview discussion enhancement suggestion
- Merged
- 4
updated Apr 07, 2020
Fix infer logic

!25 · created Mar 23, 2020 by Gervaise Henry v0.0.1 45-parallelizeTin
Doing bug confirmed
updated Mar 24, 2020
Resolve "process_count" 4 of 4 checklist items completed

!22 · created Mar 09, 2020 by Gervaise Henry v0.0.1
Doing discussion
- Merged
- 14
updated Mar 21, 2020
Develop

!24 · created Mar 16, 2020 by Gervaise Henry v0.0.1 6-processCounts
updated Mar 16, 2020
Resolve "process_RSeQC" 4 of 4 checklist items completed

!23 · created Mar 14, 2020 by Gervaise Henry v0.0.1
Doing
- Merged
- 1
updated Mar 15, 2020
Resolve "Update design docs" 5 of 5 checklist items completed

!21 · created Feb 17, 2020 by Gervaise Henry v0.0.1
Doing documentation
- Merged
- 2
- 1
updated Feb 18, 2020
Resolve "process_makeBigWig" 3 of 3 checklist items completed

!19 · created Feb 13, 2020 by Jonathan Gesell v0.0.1
CodeReview Doing
- Merged
- 1
updated Feb 15, 2020
Resolve "process_fastqc" 3 of 3 checklist items completed

!18 · created Feb 03, 2020 by Gervaise Henry v0.0.1
Doing
- Merged
- 4
updated Feb 04, 2020
Resolve "process_dedup" 3 of 3 checklist items completed

!17 · created Jan 30, 2020 by Jonathan Gesell v0.0.1
CodeReview Test
updated Feb 02, 2020
Resolve "process_getRef" 3 of 3 checklist items completed

!16 · created Jan 30, 2020 by Gervaise Henry v0.0.1
Doing
- Merged
- 6
updated Jan 30, 2020
Resolve "process_align" 0 of 4 checklist items completed

!15 · created Jan 21, 2020 by Jonathan Gesell v0.0.1
CodeReview Doing
- Merged
- 2
updated Jan 28, 2020
Resolve "process_createManifest" 3 of 3 checklist items completed

!14 · created Jan 18, 2020 by Gervaise Henry v0.0.1
Doing
- Merged
- 2
updated Jan 21, 2020
Resolve "Make scripts input files for processes" 0 of 7 checklist items completed

!12 · created Jan 18, 2020 by Gervaise Henry v0.0.1
updated Jan 18, 2020
Resolve "Add integration CI test" 1 of 7 checklist items completed

!10 · created Jan 15, 2020 by Gervaise Henry v0.0.1
CI/CD Doing
updated Jan 15, 2020
Update nextflow configs to include aws 1 of 7 checklist items completed

!9 · created Jan 14, 2020 by Gervaise Henry v0.0.1
updated Jan 14, 2020