Commits · f8e44f439fb2da08a841f5916d6b56116bda949a · GUDMAP_RBK / RNA-seq

Mar 04, 2021
- Allow uploadExexutionRun to happen with pipeline error(metadata match) · 01aaef87
  Gervaise Henry authored 4 years ago
  
  01aaef87
Mar 03, 2021
- Fix when's · 5a8a4eb0
  Gervaise Henry authored 4 years ago
  
  5a8a4eb0
- Fix uploadQC_fail input · 4034d0f9
  Gervaise Henry authored 4 years ago
  
  4034d0f9
Mar 02, 2021
- Put trackStart container in nextflow.config · c6a559e6
  Gervaise Henry authored 4 years ago
  
  c6a559e6
- Fix tabing in multiqc config · 25a58702
  Gervaise Henry authored 4 years ago
  
  25a58702
- Fix extra tab in seqwho multiqc tsv · 2c70b0fc
  Gervaise Henry authored 4 years ago
  
  2c70b0fc
- Fix no download for fastqForce · aecc04e6
  Gervaise Henry authored 4 years ago
  
  aecc04e6
- Try to fix fastq count with fastq override · bbb54705
  Gervaise Henry authored 4 years ago
  
  bbb54705
- Fix endsForce test · 46772889
  Gervaise Henry authored 4 years ago
  
  46772889
- Fix ends force · bfe6bebc
  Gervaise Henry authored 4 years ago
  
  bfe6bebc
- Change getData fastqForce varible to param · 3026d63e
  Gervaise Henry authored 4 years ago
  
  3026d63e
- Set fastq count temporarily to zero if overridden · d633e19c
  Gervaise Henry authored 4 years ago
  
  d633e19c
- Fix seqwho tsv output for multiqc · 8f50b748
  Gervaise Henry authored 4 years ago
  
  8f50b748
- Add ends override · d3e19ff3
  Gervaise Henry authored 4 years ago
  
  d3e19ff3
- Don't donwload fastqs if overridden · 1e8d161e
  Gervaise Henry authored 4 years ago
  
  1e8d161e
- Fix seqwho multiqc table · a9ee163f
  Gervaise Henry authored 4 years ago
  
  a9ee163f
- Add seqwho infer QC table to multiqc · d1271604
  Gervaise Henry authored 4 years ago
  
  d1271604
Mar 01, 2021
- Add missing speciesError to when · d9be943e
  Gervaise Henry authored 4 years ago
  
  d9be943e
- Put multiple when's into a single line · 84dd8e50
  Gervaise Henry authored 4 years ago
  
  84dd8e50
- Add handeling for low confidence seq type · 7a096fd5
  Gervaise Henry authored 4 years ago
  
  7a096fd5
Feb 28, 2021
- Disconnect confidence from species and seq type inference · b858a9d7
  Gervaise Henry authored 4 years ago
  
  b858a9d7
- Add quotes to seqwho error · 43f749d8
  Gervaise Henry authored 4 years ago
  
  43f749d8
- Add quotes to seqwho error · eec5b4c5
  Gervaise Henry authored 4 years ago
  
  eec5b4c5
Feb 24, 2021
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Move non nextflow configs back to workflow and symlink files · 4bd19e37
  Gervaise Henry authored 4 years ago
  
  4bd19e37
- Utilize seq type inference from seqwho · 3c5f30fb
  Gervaise Henry authored 4 years ago
  
  3c5f30fb
Feb 11, 2021
- Nextflow-ify · 0a4b00a6
  Gervaise Henry authored 4 years ago
  
  0a4b00a6
Feb 10, 2021
- Fix datahub ref download · 9d37cf2a
  Gervaise Henry authored 4 years ago
  
  9d37cf2a
Feb 09, 2021
- Start implementing seqwho · 34803354
  Gervaise Henry authored 4 years ago
  
  34803354
Feb 04, 2021
- Fix · b507ecd7
  Gervaise Henry authored 4 years ago
  
  b507ecd7
Jan 29, 2021
- Correct reference var name · 9cccaef7
  Gervaise Henry authored 4 years ago
  
  9cccaef7
- Fix bool spike override in getRef · 3235c1c4
  Gervaise Henry authored 4 years ago
  
  3235c1c4
- Fix getRef for spike · ced21083
  Gervaise Henry authored 4 years ago
  
  ced21083
Jan 28, 2021
- Move spike/stranded override to infer (like species), not submitter · 0bb07de4
  Gervaise Henry authored 4 years ago
  
  0bb07de4
- Convert blank nan submitted metadata to No value · 37a1345e
  Gervaise Henry authored 4 years ago
  
  37a1345e
- Try excaping tabs for metadata override for report · b1cdf286
  Gervaise Henry authored 4 years ago
  
  b1cdf286
- Fix metadata echo · 329dc950
  Gervaise Henry authored 4 years ago
  
  329dc950
Jan 27, 2021
- Fix stranded override · 04c81525
  Gervaise Henry authored 4 years ago
  
  04c81525
- Fix aggrQC if brackets · 8a1299d4
  Gervaise Henry authored 4 years ago
  
  8a1299d4