Commits · f8ab64d0be6380209f5a44db1e2d8e839a9e6bac · GUDMAP_RBK / RNA-seq

Mar 27, 2020
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 4 years ago
  
  f8ab64d0
- Update .gitlab-ci.yml · e90a7437
  Jonathan Gesell authored 4 years ago
  
  e90a7437
- Update .gitlab-ci.yml · 552c33bd
  Jonathan Gesell authored 4 years ago
  
  552c33bd
- Update .gitlab-ci.yml · cd097223
  Jonathan Gesell authored 4 years ago
  
  cd097223
- Update .gitlab-ci.yml · 0199c4c1
  Jonathan Gesell authored 4 years ago
  
  0199c4c1
- Update .gitlab-ci.yml · 7db849c4
  Jonathan Gesell authored 4 years ago
  
  7db849c4
- Update .gitlab-ci.yml · caeb8ea8
  Jonathan Gesell authored 4 years ago
  
  caeb8ea8
- Update .gitlab-ci.yml · 6f721d95
  Jonathan Gesell authored 4 years ago
  
  6f721d95
- Update .gitlab-ci.yml · 21ddb0dd
  Jonathan Gesell authored 4 years ago
  
  21ddb0dd
- Update test_dedupReads.py · 2321e6cc
  Jonathan Gesell authored 4 years ago
  
  2321e6cc
- Update test_dedupReads.py · 12b9d87f
  Jonathan Gesell authored 4 years ago
  
  12b9d87f
- Correction to .gitlab-ci.yml · 2e7299e2
  Jonathan Gesell authored 4 years ago
  
  2e7299e2
- Update test_dedupReads.py to include split, testing chr1, chr2, chr8 · a06578ad
  Jonathan Gesell authored 4 years ago
  
  a06578ad
- Update .gitlab-ci.yml to include splitting the BAM and BAI files. · 2ee9ebdc
  Jonathan Gesell authored 4 years ago
  
  2ee9ebdc
Mar 26, 2020
- Parallelized inferMetaData's TIN calculation. · 82bac4e7
  Jonathan Gesell authored 4 years ago
  
  82bac4e7
Mar 24, 2020
- Merge branch '44-stranded.logic' into '45-parallelizeTin' · e108c736
  Jonathan Gesell authored 4 years ago
```
Fix infer logic

See merge request !25
```
  e108c736
Mar 23, 2020
- Fix infer logic · 28850994
  Gervaise Henry authored 4 years ago
  
  28850994
Mar 20, 2020
- initial commit, untested · af133ded
  Jonathan Gesell authored 4 years ago
  
  af133ded
Mar 15, 2020
- Merge branch '35-RSeQC' into 'develop' · ad35f8df
  Venkat Malladi authored 5 years ago
```
Resolve "process_RSeQC"

Closes #35

See merge request !23
```
  ad35f8df
- Update dag.png · 0c28e8d2
  Gervaise Henry authored 5 years ago
  
  0c28e8d2
Mar 14, 2020
- Fix reference input for inferMeta · f774a99c
  Gervaise Henry authored 5 years ago
  
  f774a99c
- Fix dedupBam input of inferMeta · 2beb83ad
  Gervaise Henry authored 5 years ago
  
  2beb83ad
- Use dedupBam for inferMeta · ca8ec578
  Gervaise Henry authored 5 years ago
  
  ca8ec578
- Removed unused script · e5fdb858
  Gervaise Henry authored 5 years ago
  
  e5fdb858
- Update dag.png · cedf49d7
  Gervaise Henry authored 5 years ago
  
  cedf49d7
- Fix mkdir bdbag in ci · 68224f63
  Gervaise Henry authored 5 years ago
  
  68224f63
- Add back and update name of reference for inferMeta · e187976f
  Gervaise Henry authored 5 years ago
  
  e187976f
- Merge branch 'develop' into '35-RSeQC' · 575c554d
  Gervaise Henry authored 5 years ago
```
# Conflicts:
#   .gitlab-ci.yml
#   workflow/conf/biohpc.config
```
  575c554d
Mar 13, 2020
- Fix trim qc output · 23cfdc21
  Gervaise Henry authored 5 years ago
  
  23cfdc21
- Fix dedup qc output · 31054b21
  Gervaise Henry authored 5 years ago
  
  31054b21
- Add process log files · 1f7e1dc9
  Gervaise Henry authored 5 years ago
  
  1f7e1dc9
- Include optional inner distance histogram data output · 765e5226
  Gervaise Henry authored 5 years ago
  
  765e5226
- Update design docs · 6da4a7d1
  Gervaise Henry authored 5 years ago
  
  6da4a7d1
- Output align bam/bai to tuple, use rawBam for inference, fix failed read · 57220b3a
  Gervaise Henry authored 5 years ago
  
  57220b3a
Mar 12, 2020
- Fix sillier error in align unit ci pytest · 420cede9
  Gervaise Henry authored 5 years ago
  
  420cede9
- Fix silly error in align unit ci pytest · ac502364
  Gervaise Henry authored 5 years ago
  
  ac502364
- Fix deduped unit ci sorted bam/bai prefix · 1e50ff6e
  Gervaise Henry authored 5 years ago
  
  1e50ff6e
- Add bai test to dedup unit ci pytest · f50feedd
  Gervaise Henry authored 5 years ago
  
  f50feedd
- Fix bai in align unit ci pytest · c076037b
  Gervaise Henry authored 5 years ago
  
  c076037b
- Fix bam indexing output name to .bam.bai · 70e6fa19
  Gervaise Henry authored 5 years ago
  
  70e6fa19