Merge branch '35-RSeQC' into 'develop' (ad35f8df) · Commits · GUDMAP_RBK / RNA-seq · GitLab

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GUDMAP_RBK
RNA-seq
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ad35f8df

Commit ad35f8df authored 5 years ago by

Venkat Malladi

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Merge branch '35-RSeQC' into 'develop'

Resolve "process_RSeQC"

Closes #35

See merge request !23

parents 6da4a7d1 0c28e8d2

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3 merge requests!37v0.0.1,!24Develop,!23Resolve "process_RSeQC"

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.gitlab-ci.yml 14 additions, 8 deletions

.gitlab-ci.yml
docs/dag.png 0 additions, 0 deletions

docs/dag.png
workflow/conf/biohpc.config 4 additions, 1 deletion

workflow/conf/biohpc.config
workflow/nextflow.config 8 additions, 5 deletions

workflow/nextflow.config
workflow/rna-seq.nf 103 additions, 17 deletions

workflow/rna-seq.nf
workflow/scripts/bdbagFetch.sh 12 additions, 5 deletions

workflow/scripts/bdbagFetch.sh
workflow/scripts/inferMeta.sh 21 additions, 0 deletions

workflow/scripts/inferMeta.sh
workflow/tests/test_alignReads.py 2 additions, 2 deletions

workflow/tests/test_alignReads.py
workflow/tests/test_dedupReads.py 2 additions, 1 deletion

workflow/tests/test_dedupReads.py
workflow/tests/test_getData.py 2 additions, 2 deletions

workflow/tests/test_getData.py
workflow/tests/test_inferMetadata.py 14 additions, 0 deletions

workflow/tests/test_inferMetadata.py

with 182 additions and 41 deletions

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