Commits · ef4541cb2d0cad3ad054f58d14ebb4e2742e32ed · GUDMAP_RBK / RNA-seq

Mar 02, 2021
- Not stop after the first 3 images · ef4541cb
  Gervaise Henry authored 4 years ago
  
  ef4541cb
- Not stop after the first 3 images · ededb6d0
  Gervaise Henry authored 4 years ago
  
  ededb6d0
- Only singularity pull 3 containers at a time · fe84267a
  Gervaise Henry authored 4 years ago
  
  fe84267a
- Only singularity pull 5 containers at a time · c59b5eb4
  Gervaise Henry authored 4 years ago
  
  c59b5eb4
- Make cache dir at start of ci · aa955a65
  Gervaise Henry authored 4 years ago
  
  aa955a65
- Fix cache folder · 59dc53b1
  Gervaise Henry authored 4 years ago
  
  59dc53b1
- Fix cache folder · 45c4c7ac
  Gervaise Henry authored 4 years ago
  
  45c4c7ac
- Try to fix cache dir · d1fd2bec
  Gervaise Henry authored 4 years ago
  
  d1fd2bec
- Remove chmod · 8e0c03c1
  Gervaise Henry authored 4 years ago
  
  8e0c03c1
- Try to set restrictive permissions for cache · bfcce8cb
  Gervaise Henry authored 4 years ago
  
  bfcce8cb
- Set permissions for cached dir · 9aa7927c
  Gervaise Henry authored 4 years ago
  
  9aa7927c
- chmod 775 cached images · d9f5e341
  Gervaise Henry authored 4 years ago
  
  d9f5e341
- Put unit cache container extract on new lines · 4175e3c0
  Gervaise Henry authored 4 years ago
  
  4175e3c0
- Update reference and version files · 695bc202
  Gervaise Henry authored 4 years ago
  
  695bc202
- Use cached images for unit tests · a3b6bade
  Gervaise Henry authored 4 years ago
  
  a3b6bade
- Put trackStart container in nextflow.config · c6a559e6
  Gervaise Henry authored 4 years ago
  
  c6a559e6
- Try to not error on version collect · 024e7e2c
  Gervaise Henry authored 4 years ago
  
  024e7e2c
- Temp remove seqwho version · 6aa080b2
  Gervaise Henry authored 4 years ago
  
  6aa080b2
- Sep images for version colleciton · e61faa4b
  Gervaise Henry authored 4 years ago
  
  e61faa4b
- Return echo to sif names · 3eab124a
  Gervaise Henry authored 4 years ago
  
  3eab124a
- Fix sif names · 59b4661c
  Gervaise Henry authored 4 years ago
  
  59b4661c
- Remove & from version collect · 4cbda573
  Gervaise Henry authored 4 years ago
  
  4cbda573
- Make entire version collect ci single set · d6280a4b
  Gervaise Henry authored 4 years ago
  
  d6280a4b
- Try echo sif before run · 637d98b5
  Gervaise Henry authored 4 years ago
  
  637d98b5
- Add quotes around img name · ff2f89f0
  Gervaise Henry authored 4 years ago
  
  ff2f89f0
- Put sif names together · 469ef281
  Gervaise Henry authored 4 years ago
  
  469ef281
- Temp echo sif · 27f3b44f
  Gervaise Henry authored 4 years ago
  
  27f3b44f
- Try to not error if images already there · a6b4db92
  Gervaise Henry authored 4 years ago
  
  a6b4db92
- Try to not error if images already there · c99049e9
  Gervaise Henry authored 4 years ago
  
  c99049e9
- Dynamically extract containers for cache and version extraction · 1d711568
  Gervaise Henry authored 4 years ago
  
  1d711568
- Parallelize cache singularity images · cc680428
  Gervaise Henry authored 4 years ago
  
  cc680428
- Display singularity cache · 0d01fd1c
  Gervaise Henry authored 4 years ago
  
  0d01fd1c
- Put version collection after cacheing · e697def7
  Gervaise Henry authored 4 years ago
  
  e697def7
- Fix ci lint · 49771d51
  Gervaise Henry authored 4 years ago
  
  49771d51
- Add singularity cache ci and collect version collections · 15162d84
  Gervaise Henry authored 4 years ago
  
  15162d84
- Add singularity cache to all nextflow runs · 4ada2322
  Gervaise Henry authored 4 years ago
  
  4ada2322
- Add singularity cache to start before script · 1383fb10
  Gervaise Henry authored 4 years ago
  
  1383fb10
- Add back singulity cache for each run · 0de01c80
  Gervaise Henry authored 4 years ago
  
  0de01c80
- Update configs · 5e5b14e1
  Gervaise Henry authored 4 years ago
  
  5e5b14e1
- Remove singularity cache clean · 6f1db39b
  Gervaise Henry authored 4 years ago
  
  6f1db39b