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GUDMAP_RBK
RNA-seq
Commits
49771d51
Commit
49771d51
authored
4 years ago
by
Gervaise Henry
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Fix ci lint
parent
15162d84
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2 merge requests
!76
Develop
,
!71
Seqwho
Pipeline
#9376
failed with stages
in 52 seconds
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.gitlab-ci.yml
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View file @
49771d51
...
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@@ -27,16 +27,17 @@ stages:
-
consistency
cache
:
img_
cache
:
stage
:
singularity
script
:
-
>
for container in `cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq`; do
singularity pull 'docker://'${container}
done
for container in `cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq`; do
singularity pull 'docker://'${container}
done
versions
:
stage
:
singularity
script
:
-
singularity run 'docker://gudmaprbk/deriva1.4:1.0.0' deriva-download-cli --version > version_deriva.txt
-
singularity run 'docker://gudmaprbk/deriva1.4:1.0.0' bdbag --version > version_bdbag.txt
-
singularity run 'docker://gudmaprbk/python3:1.0.0' python3 --version > version_python.txt
...
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