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Commit 27f3b44f authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Temp echo sif

parent a6b4db92
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2 merge requests!76Develop,!71Seqwho
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......@@ -41,6 +41,7 @@ collect:
- >
derivaImg=$(cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | grep deriva | cut -d"/" -f2 | cut -d":" -f1)
derivaVar=$(cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq | grep deriva | cut -d"/" -f2 | cut -d":" -f2)
echo ${dir}${derivaImg}-${derivaVar}.sif
singularity run ${dir}${derivaImg}-${derivaVar}.sif deriva-download-cli --version > version_deriva.txt
singularity run ${dir}${derivaImg}-${derivaVar}.sif bdbag --version > version_bdbag.txt
- >
......
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