Commits · ef06aea5a7e66117215c2528e6782dc965a966fa · GUDMAP_RBK / RNA-seq

Jan 20, 2021
- Update errors in readme · ef06aea5
  Gervaise Henry authored 4 years ago
  
  ef06aea5
- Use 1 less process for samtools threading and limit memto 75% of available · 1fe7d8b3
  Gervaise Henry authored 4 years ago
  
  1fe7d8b3
- Make sampled align use > 32GB nodes on BioHPC · 9e121dac
  Gervaise Henry authored 4 years ago
  
  9e121dac
Jan 19, 2021
- Detect malformed fastqs · f7559c64
  Gervaise Henry authored 4 years ago
  
  f7559c64
- Don't parse manual ends from file.csv anymore · 6b6268c3
  Gervaise Henry authored 4 years ago
  
  6b6268c3
- Handle blank endness better · 41f6e91a
  Gervaise Henry authored 4 years ago
  
  41f6e91a
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Filter input bag export config to only get fastq's matching convention · 5d9c691f
  Gervaise Henry authored 4 years ago
  
  5d9c691f
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
- Update changelog · 1f07208d
  Gervaise Henry authored 4 years ago
  
  1f07208d
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
- Update changelog · f4d642f5
  Gervaise Henry authored 4 years ago
  
  f4d642f5
Jan 15, 2021
- Update CHANGELOG.md · adf2b8be
  Gervaise Henry authored 4 years ago
  
  adf2b8be
- Update CHANGELOG.md for version 1.0.2 · 041cfa5c
  Venkat Malladi authored 4 years ago
  
  041cfa5c
Jan 14, 2021
- Update CHANGELOG.md · ea1722e5
  Gervaise Henry authored 4 years ago
  
  ea1722e5
- Update changelog · f3609122
  Gervaise Henry authored 4 years ago
  
  f3609122
- Split failPreExecution into 2 processes · 982092fb
  Gervaise Henry authored 4 years ago
  
  982092fb
Jan 11, 2021
- Update changelog · e8f9080e
  Gervaise Henry authored 4 years ago
  
  e8f9080e
- Update comment about authentification · 40028645
  Gervaise Henry authored 4 years ago
  
  40028645
- Change consistency check to 5% · 8c7d30a6
  Gervaise Henry authored 4 years ago
  
  8c7d30a6
Jan 09, 2021
- Change tool version checker for badges to use latest tag · 0611f9e3
  Gervaise Henry authored 4 years ago
  
  0611f9e3
- Add median TIN to mRNA_QC table · ac1c64c4
  Gervaise Henry authored 4 years ago
  
  ac1c64c4
- Change consistency test to be +/- 1% · b8434976
  Gervaise Henry authored 4 years ago
  
  b8434976
- Update changelog · bef168da
  Gervaise Henry authored 4 years ago
  
  bef168da
Jan 08, 2021
- Add reference snippet. Close #85 . · 1ecf02a3
  Venkat Malladi authored 4 years ago
  
  1ecf02a3
Jan 06, 2021
- Update changelog · dadb4c25
  Gervaise Henry authored 4 years ago
  
  dadb4c25
- Update Changelog · b02008c7
  Gervaise Henry authored 4 years ago
  
  b02008c7
Jan 03, 2021
- Update changelog · c4e91e62
  Gervaise Henry authored 4 years ago
  
  c4e91e62
- Update changelog · e7d917ee
  Gervaise Henry authored 4 years ago
  
  e7d917ee
Dec 30, 2020
- Update changelog · 5e6b9051
  Gervaise Henry authored 4 years ago
  
  5e6b9051
Dec 29, 2020
- Update changelog · 480c8820
  Gervaise Henry authored 4 years ago
  
  480c8820
Dec 17, 2020
- Prep for version 0.1.0_indev · e8d478de
  Gervaise Henry authored 4 years ago
  
  e8d478de
Dec 14, 2020
- Update docs · 0211d123
  Gervaise Henry authored 4 years ago
  
  0211d123
- Update docs · 90aeff3e
  Gervaise Henry authored 4 years ago
  
  90aeff3e
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Nov 30, 2020
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 13, 2020
- Update changes to reflect only the change in order of steps. Fix output files. · c0a39ab8
  Venkat Malladi authored 4 years ago
  
  c0a39ab8
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 09, 2020
- Change patterns and changelong. · acc08c89
  Venkat Malladi authored 4 years ago
  
  acc08c89