Commits · ecf2f89eccac1fe5e19c4ea1b89eab82a3e86752 · GUDMAP_RBK / RNA-seq

Nov 13, 2020
- Fix extra space. · ecf2f89e
  Venkat Malladi authored 4 years ago
  
  ecf2f89e
- Remove pigz parllel option. · baf8ba31
  Venkat Malladi authored 4 years ago
  
  baf8ba31
Nov 12, 2020
- Add back parallel trim step. Moved fastqc step after trim. · 7cf5d610
  Venkat Malladi authored 4 years ago
  
  7cf5d610
Nov 09, 2020
- Change patterns and changelong. · acc08c89
  Venkat Malladi authored 4 years ago
  
  acc08c89
- Bypass markdups exit status of 1. · 0daf719e
  Venkat Malladi authored 4 years ago
  
  0daf719e
- Remove markdups version to see why it fails. · 5781d27b
  Venkat Malladi authored 4 years ago
  
  5781d27b
- try version again. · 4b16d9e3
  Venkat Malladi authored 4 years ago
  
  4b16d9e3
- try version again. · c415b314
  Venkat Malladi authored 4 years ago
  
  c415b314
- Update Markdups. · 435f3889
  Venkat Malladi authored 4 years ago
  
  435f3889
- Move to the end. · bc30e5ce
  Venkat Malladi authored 4 years ago
  
  bc30e5ce
- remove jar version. · b724942b
  Venkat Malladi authored 4 years ago
  
  b724942b
- remove seqtk and update output for stdout. · 08c58f6f
  Venkat Malladi authored 4 years ago
  
  08c58f6f
- Fix test stage name. · 482fd80d
  Venkat Malladi authored 4 years ago
  
  482fd80d
- Add in software versions and references. · 10cd6a4c
  Venkat Malladi authored 4 years ago
  
  10cd6a4c
Oct 31, 2020
- Update config for email. · 7cf8c4d2
  Venkat Malladi authored 4 years ago
  
  7cf8c4d2
- Update consistency checks to be fully in python. · 10cbf01b
  Venkat Malladi authored 4 years ago
  
  10cbf01b
Sep 13, 2020
- Update ref unit test for datahub · 45b7f679
  Gervaise Henry authored 4 years ago
  
  45b7f679
- Split grep from pipe from python · df0f368b
  Gervaise Henry authored 4 years ago
  
  df0f368b
Sep 12, 2020
- Fix extractRefData arg · 17df0fa5
  Gervaise Henry authored 4 years ago
  
  17df0fa5
Sep 11, 2020
- Change datahub ref ci form get to ls · 0883570c
  Gervaise Henry authored 4 years ago
  
  0883570c
- Use new gudmaprbk dockerhub deriva1.3 for ref unit · 160b314c
  Gervaise Henry authored 4 years ago
  
  160b314c
Sep 10, 2020
- Update .gitlab-ci.yml · 166616ec
  Venkat Malladi authored 4 years ago
  
  166616ec
- Update .gitlab-ci.yml · 6dc46c16
  Venkat Malladi authored 4 years ago
  
  6dc46c16
- Fix version · 2d08f484
  Venkat Malladi authored 4 years ago
  
  2d08f484
- Load another package · dc04540a
  Venkat Malladi authored 4 years ago
  
  dc04540a
- Update Pytest version · 300fc060
  Venkat Malladi authored 4 years ago
  
  300fc060
- Remove conda env · 73e52340
  Venkat Malladi authored 4 years ago
  
  73e52340
- Add --no-dep to conda create · 864c1f98
  Gervaise Henry authored 4 years ago
  
  864c1f98
- Fix CI lint and replicate env in hu test · fcf86055
  Gervaise Henry authored 4 years ago
  
  fcf86055
- Create deriva python env in ci until deriva1.3 docker image available · e84a5f04
  Gervaise Henry authored 4 years ago
  
  e84a5f04
Sep 09, 2020
- Link deriva auth cookie for datahub get ref · 0737fb67
  Gervaise Henry authored 4 years ago
  
  0737fb67
- Fix CI lint · 00983e2b
  Gervaise Henry authored 4 years ago
  
  00983e2b
- Put getRef in CI stage and add get from datahub · 97cd5936
  Gervaise Henry authored 4 years ago
  
  97cd5936
Aug 27, 2020
- Update .gitlab-ci.yml · 770a16cf
  Gervaise Henry authored 4 years ago
  
  770a16cf
- Update .gitlab-ci.yml · f4965121
  Gervaise Henry authored 4 years ago
  
  f4965121
- Update .gitlab-ci.yml · 99a28790
  Gervaise Henry authored 4 years ago
  
  99a28790
- Update .gitlab-ci.yml · 8b341c8a
  Gervaise Henry authored 4 years ago
  
  8b341c8a
- Update .gitlab-ci.yml · 14886d2a
  Gervaise Henry authored 4 years ago
  
  14886d2a
- Update .gitlab-ci.yml · 3e0d7cc0
  Gervaise Henry authored 4 years ago
  
  3e0d7cc0
- Update .gitlab-ci.yml · b1e860c5
  Gervaise Henry authored 4 years ago
  
  b1e860c5