Commits · e7c1ae2aea1cbe4366ddc6328ffa80b110b230ff · GUDMAP_RBK / RNA-seq

Jan 06, 2021
- add --debug to bdbag fetch · e7c1ae2a
  Gervaise Henry authored 4 years ago
  
  e7c1ae2a
Jan 04, 2021
- Fix parse raw ends · 82ec93f3
  Gervaise Henry authored 4 years ago
  
  82ec93f3
- Pass raw ends · 00ee468b
  Gervaise Henry authored 4 years ago
  
  00ee468b
- Put newline fix on updates too · 3b72c68e
  Gervaise Henry authored 4 years ago
  
  3b72c68e
- Replace string \n with newline character · 06b4cad7
  Gervaise Henry authored 4 years ago
  
  06b4cad7
- Give split study full path to credentials · dc85dfdd
  Gervaise Henry authored 4 years ago
  
  dc85dfdd
- Update split study bash script · 60ca9dae
  Gervaise Henry authored 4 years ago
  
  60ca9dae
- Update split study py script name · 77fb7bce
  Gervaise Henry authored 4 years ago
  
  77fb7bce
Dec 30, 2020
- Change color of count badges · 64d14d17
  Gervaise Henry authored 4 years ago
  
  64d14d17
- Add badges for replicate counts · fb5a2605
  Gervaise Henry authored 4 years ago
  
  fb5a2605
- Fix R version fetch for badge · 6c6deb81
  Gervaise Henry authored 4 years ago
  
  6c6deb81
- Change tool badges to blueviolet · bdc694cd
  Gervaise Henry authored 4 years ago
  
  bdc694cd
- Fix picard version query · 08e9b7e2
  Gervaise Henry authored 4 years ago
  
  08e9b7e2
- Change tool versions to query develop because lates tag doesn't have version collecting yet · 97968a47
  Gervaise Henry authored 4 years ago
  
  97968a47
- Collect tool version badges · ec59337b
  Gervaise Henry authored 4 years ago
  
  ec59337b
- Update workflow/scripts/get_updated_badge_info.sh, .gitlab-ci.yml files · aee57c31
  Gervaise Henry authored 4 years ago
  
  aee57c31
Dec 29, 2020
- Change python and bash scripts to new naming convention · c3053816
  Gervaise Henry authored 4 years ago
  
  c3053816
Dec 28, 2020
- Use updated input bag name · 91d52f90
  Gervaise Henry authored 4 years ago
  
  91d52f90
- Use production docker images for CI · 23ee2e3e
  Gervaise Henry authored 4 years ago
  
  23ee2e3e
- Use new ouput bag name type · c489b85f
  Gervaise Henry authored 4 years ago
  
  c489b85f
- Update naming convention in dataQC · 829a6187
  Gervaise Henry authored 4 years ago
  
  829a6187
Dec 17, 2020
- Fix CI uploadQC · 2f23de58
  Gervaise Henry authored 4 years ago
  
  2f23de58
- Fix countData · 4868d07b
  Gervaise Henry authored 4 years ago
  
  4868d07b
- Try and fix CI countData · 8ae1644d
  Gervaise Henry authored 4 years ago
  
  8ae1644d
- Fix bag fetch name for test · a7af3936
  Gervaise Henry authored 4 years ago
  
  a7af3936
- Fix convert gene symbol script to use new countTable name · cdd32cb3
  Gervaise Henry authored 4 years ago
  
  cdd32cb3
- Check for old mRNA QC and delete catalog entry · 3aa23f2a
  Gervaise Henry authored 4 years ago
  
  3aa23f2a
- Change processed file ouputs to use _ as separator for custom txt · a6562099
  Gervaise Henry authored 4 years ago
  
  a6562099
- Start changing model · 8792bf4b
  Gervaise Henry authored 4 years ago
  
  8792bf4b
Dec 07, 2020
- Add upload output bag · ab0e4bb6
  Gervaise Henry authored 4 years ago
  
  ab0e4bb6
Dec 05, 2020
- Add upload mRNA QC · e4b99530
  Gervaise Henry authored 4 years ago
  
  e4b99530
Dec 02, 2020
- Add upload execution run · 62790800
  Gervaise Henry authored 4 years ago
  
  62790800
Nov 30, 2020
- Cleanup uploadInputBag.py · 532692ac
  Gervaise Henry authored 4 years ago
  
  532692ac
- Add uploadInputBag · eb83dee4
  Gervaise Henry authored 4 years ago
  
  eb83dee4
Nov 11, 2020
- Fix id in generate versions. · df286d4f
  Venkat Malladi authored 4 years ago
  
  df286d4f
Nov 10, 2020
- Address typo's and refernces to pipeline. · 43e3a5e0
  Venkat Malladi authored 4 years ago
  
  43e3a5e0
Nov 09, 2020
- Fix regex markdups. · 192da4d6
  Venkat Malladi authored 4 years ago
  
  192da4d6
- Fix regex. · 61468bd9
  Venkat Malladi authored 4 years ago
  
  61468bd9
- Change patterns and changelong. · acc08c89
  Venkat Malladi authored 4 years ago
  
  acc08c89
- Update Markdups. · 435f3889
  Venkat Malladi authored 4 years ago
  
  435f3889