Cleanup uploadInputBag.py

workflow/scripts/uploadInputBag.py

@@ -6,12 +6,13 @@ from datetime import datetime
 
 def get_args():
     parser = argparse.ArgumentParser()
-    parser.add_argument('-f', '--file', help="file", required=True)
-    parser.add_argument('-l', '--loc', help="location", required=True)
-    parser.add_argument('-s', '--md5', help="md5", required=True)
-    parser.add_argument('-b', '--bytes', help="bytes", required=True)
-    parser.add_argument('-o', '--host', help="bytes", required=True)
-    parser.add_argument('-c', '--cookie', help="bytes", required=True)
+    parser.add_argument('-f', '--file', help="file name", required=True)
+    parser.add_argument('-l', '--loc', help="datahub location", required=True)
+    parser.add_argument('-s', '--md5', help="md5 sum", required=True)
+    parser.add_argument('-b', '--bytes', help="size in bytes", required=True)
+    parser.add_argument('-n', '--notes', help="notes", default="", required=False)
+    parser.add_argument('-o', '--host', help="datahub host", required=True)
+    parser.add_argument('-c', '--cookie', help="cookie token", required=True)
     args = parser.parse_args()
     return args
 
@@ -26,7 +27,7 @@ def main(hostname, catalog_number, credential):
         "File_MD5": args.md5,
         "File_Bytes": args.bytes,
         "File_Creation_Time": datetime.now().replace(microsecond=0).isoformat(),
-        "Notes": "TEST",
+        "Notes": args.notes,
         "Bag_Type": "Replicate_Input_Seq"
         }
 
@@ -34,8 +35,8 @@ def main(hostname, catalog_number, credential):
     rid = entities[0]["RID"]
 
     print(rid)
-    
-        
+
+
 if __name__ == '__main__':
     args = get_args()
     cli = BaseCLI("Custom RNASeq query", None, 1)