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Commit 6c6deb81 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix R version fetch for badge

parent 4e24282f
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2 merge requests!58Develop,!55Resolve "Add tool version badges"
Pipeline #8749 failed with stages
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......@@ -19,7 +19,7 @@ hisat2_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep
samtools_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o Samtools.* | grep -oP "(?<=d>).*(?=\<)")
picard_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o 'picard (MarkDuplicates)'.* | grep -oP "(?<=d>).*(?=\<)")
featurecounts_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o featureCounts.* | grep -oP "(?<=d>).*(?=\<)")
r_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o R.* | grep -oP "(?<=d>).*(?=\<)")
r_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o '>R<'.* | grep -oP "(?<=d>).*(?=\<)")
deeptools_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o deepTools.* | grep -oP "(?<=d>).*(?=\<)")
fastqc_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o FastQC.* | grep -oP "(?<=d>).*(?=\<)")
multiqc_version=$(git show origin/develop:docs/software_versions_mqc.yaml | grep -o MultiQC.* | grep -oP "(?<=d>).*(?=\<)")
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