Commits · e76f7affc2df36f79998b5db52ce1eb44461eb2a · GUDMAP_RBK / RNA-seq · GitLab

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Jul 30, 2020
- Remove cache dependencies #27 · e76f7aff
  Gervaise Henry authored 4 years ago
  
  e76f7aff
- Fix cache dependencies #27 · b1e53c7d
  Gervaise Henry authored 4 years ago
  
  b1e53c7d
- Setup dummy se conssistency test with cache dependencies · ecc08451
  Gervaise Henry authored 4 years ago
  
  ecc08451
- Add qc outputs from integration tests for consistency tests #27 · 33fd5b4c
  Gervaise Henry authored 4 years ago
  
  33fd5b4c
- Test for pytest for parseMetadata: pass+fail test worked... #54 · ea7ca4ad
  Gervaise Henry authored 4 years ago
  
  ea7ca4ad
- Test for pytest for parseMetadata: supposed to fail #54 · f57f9950
  Gervaise Henry authored 4 years ago
  
  f57f9950
- Test for pytest for parseMetadata: supposed to pass #54 · 7179e4ed
  Gervaise Henry authored 4 years ago
  
  7179e4ed
- Edit dataQC pytest: should fail #48 · e8780f74
  Gervaise Henry authored 4 years ago
  
  e8780f74
- Test for pytest for parseMetadata: supposed to pass #54 · e4b4d6f5
  Gervaise Henry authored 4 years ago
  
  e4b4d6f5
- Test for pytest for parseMetadata: supposed to pass #54 · b7cceb94
  Gervaise Henry authored 4 years ago
  
  b7cceb94
- Test for pytest for parseMetadata: supposed to pass #54 · 0ab26d0d
  Gervaise Henry authored 4 years ago
  
  0ab26d0d
- Fail test for pytest for parseMetadata passed, test pass #54 · 2630f906
  Gervaise Henry authored 4 years ago
  
  2630f906
- Fix pytest for parseMetadata: expect fail #54 · eddf3c14
  Gervaise Henry authored 4 years ago
  
  eddf3c14
- Add pytest for parseMetadata: expect fail #54 · 5c4e2529
  Gervaise Henry authored 4 years ago
  
  5c4e2529
- Fix dataQC unit test: addition worked #48 · b702f897
  Gervaise Henry authored 4 years ago
  
  b702f897
- Test unit test addition for #48 · 419fa8c6
  Gervaise Henry authored 4 years ago
  
  419fa8c6
- Add fastqc commad to unit now that using singularity run · 2c60afce
  Gervaise Henry authored 4 years ago
  
  2c60afce
- Revert fastq unit to singularity run · a70781aa
  Gervaise Henry authored 4 years ago
  
  a70781aa
- Try singularity exec for fastqc unit test · 24284602
  Gervaise Henry authored 4 years ago
  
  24284602
- Add new docker images to CI · d6f6fd25
  Gervaise Henry authored 4 years ago
  
  d6f6fd25
Jul 14, 2020
- Return background run to integratiion · 8d3d9dea
  Gervaise Henry authored 4 years ago
  
  8d3d9dea
- Remove nextflow -bg from integration test · 299899f4
  Gervaise Henry authored 4 years ago
  
  299899f4
- Update nextflow and singularity versions in CI · 98cf06b5
  Gervaise Henry authored 4 years ago
  
  98cf06b5
- Fix new CI unit tests · 3da0fb06
  Gervaise Henry authored 4 years ago
  
  3da0fb06
- Update CI unit tests to use repRID Q-Y5F6 · 3301ebb4
  Gervaise Henry authored 4 years ago
  
  3301ebb4
- Add unit test run for all mea parseta parsed · 83618d9a
  Gervaise Henry authored 4 years ago
  
  83618d9a
Apr 25, 2020
- Add ci flag from tracking · 2d0a3ebc
  Gervaise Henry authored 5 years ago
  
  2d0a3ebc
Apr 22, 2020
- Fix dataQC pytest · 4632cfb9
  Gervaise Henry authored 5 years ago
  
  4632cfb9
- Add && to multiline inferMetadata unit ci · 99632fd2
  Gervaise Henry authored 5 years ago
  
  99632fd2
- Move parseMetadata unit ci if statements to single line · e7937756
  Gervaise Henry authored 5 years ago
  
  e7937756
- Fix inferMetadata unit · 1310010d
  Gervaise Henry authored 5 years ago
  
  1310010d
- Fix ci yml syntax · 4aa0f8d6
  Gervaise Henry authored 5 years ago
  
  4aa0f8d6
- Add unit CI test for (new) inferMetadata · c17b8a62
  Gervaise Henry authored 5 years ago
  
  c17b8a62
- Fix align unit summary output · 488fff57
  Gervaise Henry authored 5 years ago
  
  488fff57
- Change parseMetadata CI unit test to match new mechanism · c53ffd6c
  Gervaise Henry authored 5 years ago
  
  c53ffd6c
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 5 years ago
  
  53c34278
Apr 07, 2020
- Reorder processes · 1d48e1ef
  Gervaise Henry authored 5 years ago
  
  1d48e1ef
- Fix nextflow/runner error, change singularity cache, and limit processes in unit ci to 20 · c0adecfd
  Gervaise Henry authored 5 years ago
  
  c0adecfd
Mar 30, 2020
- Corrected typo in dedup step. · 98bed3b8
  Jonathan Gesell authored 5 years ago
  
  98bed3b8
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 5 years ago
  
  622ebfca