Commits · a19f61d1395bc557d6b74dc0497014b38aa90d4b · GUDMAP_RBK / RNA-seq

Jan 25, 2021
- Convert strandedness from yes/no to t/f · a19f61d1
  Gervaise Henry authored 4 years ago
  
  a19f61d1
- Convert strandedness from yes/no to t/f · b9798355
  Gervaise Henry authored 4 years ago
  
  b9798355
Jan 19, 2021
- Fix spike/species asignment for unexpected · 3b99da50
  Gervaise Henry authored 4 years ago
  
  3b99da50
- Fix python else syntac · 00b82094
  Gervaise Henry authored 4 years ago
  
  00b82094
- Further remove parsing restrictions from stranded/spike/species · 29e5ce6b
  Gervaise Henry authored 4 years ago
  
  29e5ce6b
- Remove ability to count fastqs manually from file.csv · f1d40472
  Gervaise Henry authored 4 years ago
  
  f1d40472
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
Jan 04, 2021
- Fix parse raw ends · 82ec93f3
  Gervaise Henry authored 4 years ago
  
  82ec93f3
- Pass raw ends · 00ee468b
  Gervaise Henry authored 4 years ago
  
  00ee468b
Dec 29, 2020
- Change python and bash scripts to new naming convention · c3053816
  Gervaise Henry authored 4 years ago
  
  c3053816
Sep 14, 2020
- Auto pep8'd all python code · 2ec44620
  Gervaise Henry authored 4 years ago
  
  2ec44620
Aug 03, 2020
- Move read length num to str to python script · bfaf76ce
  Gervaise Henry authored 4 years ago
  
  bfaf76ce
- Output read length as str · 42b5b070
  Gervaise Henry authored 4 years ago
  
  42b5b070
- Extract read length from submitter metadata · e8b92b99
  Gervaise Henry authored 4 years ago
  
  e8b92b99
May 01, 2020
- Add experiment and study rid's to multiqc report · 8c2c17a2
  Gervaise Henry authored 4 years ago
  
  8c2c17a2
Apr 22, 2020
- Add inference and apply new naming standards · 53c34278
  Gervaise Henry authored 4 years ago
  
  53c34278
Jan 30, 2020
- Pass endness to stranded param · 1902055c
  Gervaise Henry authored 5 years ago
  
  1902055c
Jan 29, 2020
- Fix stranded parse and add 8 cores to trimData · 471380f7
  Gervaise Henry authored 5 years ago
  
  471380f7
Jan 22, 2020
- Corrected scope-specific error in parseMeta.py · ca261a6b
  Jonathan Gesell authored 5 years ago
  
  ca261a6b
- Updated Hisat2 options, and output of parseMeta. · d92d93f9
  Jonathan Gesell authored 5 years ago
  
  d92d93f9
Jan 20, 2020
- Change parseMeta to csv ouput · 32aae481
  Gervaise Henry authored 5 years ago
  
  32aae481
Jan 19, 2020
- Ignore FutureWarnings · 714c61bc
  Gervaise Henry authored 5 years ago
  
  714c61bc
- Ignore FutureWarnings · 9081851f
  Gervaise Henry authored 5 years ago
  
  9081851f
- Fix endsManual · e7eaeaa4
  Gervaise Henry authored 5 years ago
  
  e7eaeaa4
- Fix fastq # test · 70ce7af1
  Gervaise Henry authored 5 years ago
  
  70ce7af1
- Fix len fastqs · fbd2da78
  Gervaise Henry authored 5 years ago
  
  fbd2da78
- Fix undetected meta endness · 29f36785
  Gervaise Henry authored 5 years ago
  
  29f36785
- Add manual detection of endness if not stored · 0acf38a4
  Gervaise Henry authored 5 years ago
  
  0acf38a4
Jan 18, 2020
- Parse metadata · e32cb502
  Gervaise Henry authored 5 years ago
  
  e32cb502
- Add checks for meta repRID · 710a67d9
  Gervaise Henry authored 5 years ago
  
  710a67d9
- Initial code · 2be5d85a
  Gervaise Henry authored 5 years ago
  
  2be5d85a