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Commit 3b99da50 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix spike/species asignment for unexpected

parent 00b82094
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2 merge requests!65Develop,!64Resolve "samtools sort: couldn't allocate memory for bam_mem"
......@@ -78,7 +78,7 @@ def main():
elif (metaFile.Used_Spike_Ins.unique() == "no"):
spike = "no"
else:
stranded = metaFile.Used_Spike_Ins.unique()[0]
spike = metaFile.Used_Spike_Ins.unique()[0]
print(spike)
# Get species metadata from 'Experiment.csv'
......@@ -88,7 +88,7 @@ def main():
elif (metaFile.Species.unique() == "Homo sapiens"):
species = "Homo sapiens"
else:
stranded = metaFile.Species.unique()[0]
species = metaFile.Species.unique()[0]
print(species)
# Get read length metadata from 'Experiment Settings.csv'
......
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