From 3b99da5045a3eec9d68c618890856a37c577d0ef Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 19 Jan 2021 20:18:29 -0600
Subject: [PATCH] Fix spike/species asignment for unexpected
---
workflow/scripts/parse_meta.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/parse_meta.py b/workflow/scripts/parse_meta.py
index aa7114d..fdbc86c 100644
--- a/workflow/scripts/parse_meta.py
+++ b/workflow/scripts/parse_meta.py
@@ -78,7 +78,7 @@ def main():
elif (metaFile.Used_Spike_Ins.unique() == "no"):
spike = "no"
else:
- stranded = metaFile.Used_Spike_Ins.unique()[0]
+ spike = metaFile.Used_Spike_Ins.unique()[0]
print(spike)
# Get species metadata from 'Experiment.csv'
@@ -88,7 +88,7 @@ def main():
elif (metaFile.Species.unique() == "Homo sapiens"):
species = "Homo sapiens"
else:
- stranded = metaFile.Species.unique()[0]
+ species = metaFile.Species.unique()[0]
print(species)
# Get read length metadata from 'Experiment Settings.csv'
--
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