Commits · 6cdde011e280d030bc36c88497dbf864162f28d6 · GUDMAP_RBK / RNA-seq

Jan 20, 2021
- Upgrade version to v1.0.3 · 6cdde011
  Gervaise Henry authored 4 years ago
  
  6cdde011
- Fix file structure error detection · b95cdee7
  Gervaise Henry authored 4 years ago
  
  b95cdee7
Jan 19, 2021
- Fix if then · 9c9d4191
  Gervaise Henry authored 4 years ago
  
  9c9d4191
- Fix endsManual assignment · 2464b2cb
  Gervaise Henry authored 4 years ago
  
  2464b2cb
- Fix fastq file error detection · c28fcce2
  Gervaise Henry authored 4 years ago
  
  c28fcce2
- Make dummy fastqc output if fail · 3b6afce4
  Gervaise Henry authored 4 years ago
  
  3b6afce4
- Detect malformed fastqs · f7559c64
  Gervaise Henry authored 4 years ago
  
  f7559c64
- Fix spike/species asignment for unexpected · 3b99da50
  Gervaise Henry authored 4 years ago
  
  3b99da50
- Fix python else syntac · 00b82094
  Gervaise Henry authored 4 years ago
  
  00b82094
- Further remove parsing restrictions from stranded/spike/species · 29e5ce6b
  Gervaise Henry authored 4 years ago
  
  29e5ce6b
- Remove ability to count fastqs manually from file.csv · f1d40472
  Gervaise Henry authored 4 years ago
  
  f1d40472
- Don't parse manual ends from file.csv anymore · 6b6268c3
  Gervaise Henry authored 4 years ago
  
  6b6268c3
- Fix elif · 2ef85c6b
  Gervaise Henry authored 4 years ago
  
  2ef85c6b
- Handle blank endness better · 41f6e91a
  Gervaise Henry authored 4 years ago
  
  41f6e91a
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Filter input bag export config to only get fastq's matching convention · 5d9c691f
  Gervaise Henry authored 4 years ago
  
  5d9c691f
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
- Physically move fastqc process up · 51f9e8ff
  Gervaise Henry authored 4 years ago
  
  51f9e8ff
- Fix fastq run before trim · 7d4badfe
  Gervaise Henry authored 4 years ago
  
  7d4badfe
- Move fastqc before trim · 67b0e41e
  Gervaise Henry authored 4 years ago
  
  67b0e41e
- Update changelog · 1f07208d
  Gervaise Henry authored 4 years ago
  
  1f07208d
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
- Update changelog · f4d642f5
  Gervaise Henry authored 4 years ago
  
  f4d642f5
Jan 18, 2021
- Move mem param to sort · 527d9358
  Gervaise Henry authored 4 years ago
  
  527d9358
- Copy samtools mem param fix to align sample · 0bfa5ba9
  Gervaise Henry authored 4 years ago
  
  0bfa5ba9
- Double excape * · 4ed64765
  Gervaise Henry authored 4 years ago
  
  4ed64765
- Add -m to samtools sort · 5988eb64
  Gervaise Henry authored 4 years ago
  
  5988eb64
Jan 15, 2021
- Update CHANGELOG.md · adf2b8be
  Gervaise Henry authored 4 years ago
  
  adf2b8be
- Merge branch '104-misspelled-process-name' into 'develop' · 23f8b219
  Gervaise Henry authored 4 years ago
```
REsolve Misspelled process name in config

Closes #104

See merge request !62
```
  23f8b219
- Update software versions. · 14a920e0
  Venkat Malladi authored 4 years ago
  
  14a920e0
- Remove deriva from the ci. · 282d3c11
  Venkat Malladi authored 4 years ago
  
  282d3c11
- Add in missinng process config. · fa009e23
  Venkat Malladi authored 4 years ago
  
  fa009e23
- Update CHANGELOG.md for version 1.0.2 · 041cfa5c
  Venkat Malladi authored 4 years ago
  
  041cfa5c
- Update biohpc.config · 73490420
  Venkat Malladi authored 4 years ago
  
  73490420
- Update aws.config · bce79412
  Venkat Malladi authored 4 years ago
  
  bce79412
- Fix process name in config file · a36cfc7b
  Venkat Malladi authored 4 years ago
  
  a36cfc7b
Jan 14, 2021
- Update CHANGELOG.md · ea1722e5
  Gervaise Henry authored 4 years ago
  
  ea1722e5
- Merge branch '101-bug.failPreExecution' into 'develop' · 0536a139
  Venkat Malladi authored 4 years ago
```
Resolve "failPreExecution not running on fastq error"

Closes #102, #97, #96, #103, and #101

See merge request !60
```
  0536a139
- Update dage and software version · 6e3a0f8e
  Gervaise Henry authored 4 years ago
  
  6e3a0f8e