Commits · 41f6e91a74ea77494de24489b2eb6fbfbdbcd247 · GUDMAP_RBK / RNA-seq

Jan 19, 2021
- Handle blank endness better · 41f6e91a
  Gervaise Henry authored 4 years ago
  
  41f6e91a
- Remove redundant check for multiple fastqs in parse metadata · 538a5074
  Gervaise Henry authored 4 years ago
  
  538a5074
- Allow .R[1,2] and _R[1,2] fastqs · 56d35250
  Gervaise Henry authored 4 years ago
  
  56d35250
- Filter input bag export config to only get fastq's matching convention · 5d9c691f
  Gervaise Henry authored 4 years ago
  
  5d9c691f
- Only used fastq's named correctly · d78689ad
  Gervaise Henry authored 4 years ago
  
  d78689ad
- Physically move fastqc process up · 51f9e8ff
  Gervaise Henry authored 4 years ago
  
  51f9e8ff
- Fix fastq run before trim · 7d4badfe
  Gervaise Henry authored 4 years ago
  
  7d4badfe
- Move fastqc before trim · 67b0e41e
  Gervaise Henry authored 4 years ago
  
  67b0e41e
- Update changelog · 1f07208d
  Gervaise Henry authored 4 years ago
  
  1f07208d
- Allow unexpected values for stranded/spike/species · 8a91ad1b
  Gervaise Henry authored 4 years ago
  
  8a91ad1b
- Update changelog · f4d642f5
  Gervaise Henry authored 4 years ago
  
  f4d642f5
Jan 18, 2021
- Move mem param to sort · 527d9358
  Gervaise Henry authored 4 years ago
  
  527d9358
- Copy samtools mem param fix to align sample · 0bfa5ba9
  Gervaise Henry authored 4 years ago
  
  0bfa5ba9
- Double excape * · 4ed64765
  Gervaise Henry authored 4 years ago
  
  4ed64765
- Add -m to samtools sort · 5988eb64
  Gervaise Henry authored 4 years ago
  
  5988eb64
Jan 15, 2021
- Update CHANGELOG.md · adf2b8be
  Gervaise Henry authored 4 years ago
  
  adf2b8be
- Merge branch '104-misspelled-process-name' into 'develop' · 23f8b219
  Gervaise Henry authored 4 years ago
```
REsolve Misspelled process name in config

Closes #104

See merge request !62
```
  23f8b219
- Update software versions. · 14a920e0
  Venkat Malladi authored 4 years ago
  
  14a920e0
- Remove deriva from the ci. · 282d3c11
  Venkat Malladi authored 4 years ago
  
  282d3c11
- Add in missinng process config. · fa009e23
  Venkat Malladi authored 4 years ago
  
  fa009e23
- Update CHANGELOG.md for version 1.0.2 · 041cfa5c
  Venkat Malladi authored 4 years ago
  
  041cfa5c
- Update biohpc.config · 73490420
  Venkat Malladi authored 4 years ago
  
  73490420
- Update aws.config · bce79412
  Venkat Malladi authored 4 years ago
  
  bce79412
- Fix process name in config file · a36cfc7b
  Venkat Malladi authored 4 years ago
  
  a36cfc7b
Jan 14, 2021
- Update CHANGELOG.md · ea1722e5
  Gervaise Henry authored 4 years ago
  
  ea1722e5
- Merge branch '101-bug.failPreExecution' into 'develop' · 0536a139
  Venkat Malladi authored 4 years ago
```
Resolve "failPreExecution not running on fastq error"

Closes #102, #97, #96, #103, and #101

See merge request !60
```
  0536a139
- Update dage and software version · 6e3a0f8e
  Gervaise Henry authored 4 years ago
  
  6e3a0f8e
- Fix script name · effe7d20
  Gervaise Henry authored 4 years ago
  
  effe7d20
- Update manifest version · 165fc906
  Gervaise Henry authored 4 years ago
  
  165fc906
- Fix mistype error · f839e74f
  Gervaise Henry authored 4 years ago
  
  f839e74f
- Update changelog · f3609122
  Gervaise Henry authored 4 years ago
  
  f3609122
- Change replicate count for badges to count all replicates that match major version number · b104fc98
  Gervaise Henry authored 4 years ago
  
  b104fc98
- Output execution run rid to tracking for fail and failPre Execution · 413e1ce6
  Gervaise Henry authored 4 years ago
  
  413e1ce6
- Add ambiguous species, trunkated fastq, R1/R2 mismatch to integration tests · 4d111e92
  Gervaise Henry authored 4 years ago
  
  4d111e92
- Split failPreExecution into 2 processes · 982092fb
  Gervaise Henry authored 4 years ago
  
  982092fb
Jan 12, 2021
- Fix complete/fail date tracking passing · 71592755
  Gervaise Henry authored 4 years ago
  
  71592755
- Merge branch '87-update_snippets' into 'develop' · 2f8e3497
  Venkat Malladi authored 4 years ago
```
Prep of 1.0.0 release

Closes #91, #85, and #87

See merge request !57
```
  2f8e3497
Jan 11, 2021
- Fix json uploads to tracking · 312a6047
  Gervaise Henry authored 4 years ago
  
  312a6047
- Fix date ouput for finalize execution run table · 0b6fa2aa
  Gervaise Henry authored 4 years ago
  
  0b6fa2aa
- Fix execution run rid upload to tracking table · 8b71fe3c
  Gervaise Henry authored 4 years ago
  
  8b71fe3c